FC923718

Overview
NameFC923718
Unique NameFC923718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.929e-51
Identity = 92/189 (48.68%), Postives = 127/189 (67.20%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            K+N+C +V G    G+M +D+K+RFSI GKP+YH+   S+FS+YTVVH     K+DP APL K+CLL CGV  GLGA WN A V+ GS V +FGLGTV             ++++G+DI+P K ++AK FGVT+F+N  D  +PI QV+  +T GG D+SFEC+G+  +   AL+ C  GWG +V +GV
Sbjct:  112 KSNMC-QVLGMERKGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGV 299          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.929e-51
Identity = 105/188 (55.85%), Postives = 127/188 (67.55%), Query Frame = 3
Query:    9 NLCGKVRGATGA-GVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            NLC  +R   G+   +M D  SRF+  GK I+HF+GTSTF++YTVVH+ +VA+ID  APL+KVCL+GCG  TG GA    AKVEPGS  AVFGLG V             SR+IGIDI+  KF +AK  G TE +NP D  KPIQ+VL ++T GGVDYSFE IG +  M AAL CC   +GTSVIVGV
Sbjct:  109 NLC--IRNDLGSPSGLMADGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVEPGSTCAVFGLGGVGLSTIMGCKAAGASRIIGIDINKDKFAKAKELGATECINPLDCKKPIQEVLSEMTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVGV 294          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.297e-51
Identity = 106/190 (55.79%), Postives = 126/190 (66.32%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            K NLC      +G+G +M D  SRF+  GK I+HF+ TSTF++YTVVH+ SV KIDP APL+KVCL+GCG  TG GA   TAKVEPGSI AVFGLG V             SR+IG+DI+  KF +AK  G TE +NP D  KPI +VL DLT G GVDYSFE IG    M +A   CH+  GTSV+VGV
Sbjct:  107 KGNLCTSNDLNSGSG-LMPDGTSRFTCKGKSIHHFISTSTFTEYTVVHENSVVKIDPSAPLEKVCLIGCGFSTGYGAAMQTAKVEPGSICAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKEMGATECINPLDFKKPINEVLFDLTGGEGVDYSFEVIGRTETMISAFTSCHQNLGTSVVVGV 295          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.613e-51
Identity = 101/193 (52.33%), Postives = 123/193 (63.73%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPK--DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 575
            KTNLCGK+R   G G ++ D  SRF   GK ++H+MG S+FSQYTVV D+SV K+  +AP DK CLLGCGV TG GA  NTAK+  G  + VFG G +             S +I IDI+  K   A  FG T+FVNP        I   L+D+TDGG DY+F+C GNV VMR ALE CHKGWG S+I+GVAA
Sbjct:  109 KTNLCGKIRATQGKG-LLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISKGDKIGVFGAGCIGLSVIQGAVSKGASEIIVIDINDSKKAWADQFGATKFVNPTTLPEGTNIVDYLIDITDGGFDYTFDCTGNVQVMRNALESCHKGWGESIIIGVAA 300          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.613e-51
Identity = 104/189 (55.03%), Postives = 125/189 (66.14%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            K NLC K      A  +M D  SRF+  GK I+HF GTSTF++YTV+H+ +VAKID  APL+KVCL+GCG  TG GA   TAKVEPGS  AVFGLG V             SR+IG+DI+  KF +AK  G T+ VNPKD  KPI +VL+++T  GVDYSFE IG+   M AAL  CH  +G SVIVGV
Sbjct:  107 KGNLCRK-NDIGPASALMPDGTSRFTCKGKAIHHFAGTSTFTEYTVLHETAVAKIDAAAPLEKVCLIGCGFSTGYGAALQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKELGATDCVNPKDFTKPIHEVLMEMTGLGVDYSFEVIGHTETMAAALASCHFNYGVSVIVGV 294          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 9.574e-51
Identity = 103/189 (54.50%), Postives = 124/189 (65.61%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            K NLC K   ++    +M D  +RF+  GK I+HF+GTSTF++YTVVH+ + AKID  APL+KVCL+GCG  TG GAV  TAKVEPGS  AVFGLG V             SR+I IDI+  KF +AK  G TE VNPKD  KPI +VL ++T  GVDYSFE IG +  M  AL  CH  +G SVIVGV
Sbjct:  107 KGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIAIDINKDKFAKAKELGATECVNPKDFKKPIHEVLTEMTGKGVDYSFEVIGRIETMTEALASCHYNYGVSVIVGV 295          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.250e-50
Identity = 99/189 (52.38%), Postives = 126/189 (66.67%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            ++NLC + +  T     + D  SRFS  GKPI+HF+ TSTFSQYTVV D++VAKID  APLDKVCL+GCG  TG G+    AKV PGS  AVFGLG V             +++I +DI+  KF +AK  G T+ +NP+D+ KPIQ+VL ++TDGGVD+SFE IG +  M +AL  CH   G SVIVGV
Sbjct:  108 ESNLCCQTKNLTQPKGALLDGTSRFSCRGKPIHHFISTSTFSQYTVVDDIAVAKIDAAAPLDKVCLIGCGFSTGYGSAVQVAKVTPGSTCAVFGLGGVGLSVVIGCKTAGAAKIIAVDINKDKFAKAKELGATDCINPQDYTKPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGV 296          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.250e-50
Identity = 96/172 (55.81%), Postives = 122/172 (70.93%), Query Frame = 3
Query:   54 MNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            + D   RF+  GKPI+HF+GTSTFSQYTVV + +VAKID  +PL+KVCL+GCG  TG G+  N AKV PGS+ AVFGLG V             +R+I +DI+  KF +AK  G TE +NP+D+ KPIQ+VL ++TDGGVD+SFE IG +  M A+L CCH+  GTSVIVGV
Sbjct:  124 LQDGTRRFTCRGKPIHHFVGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSVCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGV 295          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.133e-50
Identity = 104/193 (53.89%), Postives = 124/193 (64.25%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPK--DHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 575
            KTNLCGK+R   G GVM  D  SRF+  GK I HFMG STFSQYTVV D+SV  I+P+A  DK CLLGCG+ TG GA   TA V+ G  VAVFG G V             +++I +DI  KK +  +  G T FVNP        I   L+++TDGG D++F+C GNV VMR ALE CHKGWGTSVI+GVAA
Sbjct:  111 KTNLCGKIRATQGKGVMP-DGTSRFTCKGKEILHFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITANVQKGDNVAVFGGGIVGLSVIQGCAERGAAQIILVDISDKKEEWGQKLGATAFVNPTKLPEGTTIVDKLIEMTDGGCDFTFDCTGNVGVMRNALEACHKGWGTSVIIGVAA 302          
BLAST of FC923718 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.133e-50
Identity = 101/189 (53.44%), Postives = 124/189 (65.61%), Query Frame = 3
Query:    3 KTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 569
            K NLC K   ++    +M D  +RF+  GK I+HF+GTSTF++YTVVH+ + AKID  APL+KVCL+GCG  TG GAV  TAKVE GS  AVFGLG V             SR+I +DI+  KF +AK  G TE +NPKD  KPI +VL ++T  GVDYSFE IG +  M AAL  CH  +G SVIVGV
Sbjct:  108 KGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVEAGSTCAVFGLGGVGLSVVMGCKAAGASRIIAVDINKDKFAKAKELGATECINPKDFKKPIHEVLTEMTGQGVDYSFEVIGRIETMTAALASCHNNYGVSVIVGV 296          
The following BLAST results are available for this feature:
BLAST of FC923718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADHL6_ARATH1.929e-5148.68Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADH1_ALLMI1.929e-5155.85Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH1_NAJNA4.297e-5155.79Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
FADH_PICPA5.613e-5152.33S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH1_STRCA5.613e-5155.03Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_COTJA9.574e-5154.50Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1_RAT1.250e-5052.38Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1B_PAPHA1.250e-5055.81Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
FADH_CANMA2.133e-5053.89S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH1_CHICK2.133e-5053.44Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]

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Properties
Property NameValue
Genbank descriptionC31708B12EF StrClemenN Citrus clementina cDNA clone C31708B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923718 ID=FC923718; Name=FC923718; organism=Citrus clementina; type=EST; length=577bp
GAAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTC
ATGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTA
TCACTTCATGGGAACCTCAACATTTAGCCAGTACACAGTTGTGCATGATG
TTAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACAAAGTATGCCTT
CTTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGGAACACTGCAAA
AGTAGAGCCGGGTTCTATAGTTGCTGTTTTTGGCCTTGGGACTGTTGGCC
TTGCTGTGGCAGAGGGTGCAAAGGCAGCTGGAGCTTCACGTGTTATTGGT
ATAGATATTGACCCAAAAAAGTTTGATAGAGCAAAGAATTTTGGAGTTAC
TGAATTTGTAAATCCCAAGGACCATGACAAACCCATTCAGCAGGTCCTTG
TCGATCTCACGGATGGTGGTGTTGACTATAGTTTTGAATGCATTGGCAAT
GTCTCTGTGATGAGGGCAGCTTTGGAATGCTGTCACAAGGGCTGGGGAAC
ATCAGTTATTGTGGGTGTTGCTGCATC
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