FC923773

Overview
NameFC923773
Unique NameFC923773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP3_BRACM (Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.252e-20
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 302
            F+EG +  P++  S+ LPE+V   GQ+I+LS  K  L+ +QD A+++++ IS QPPLK     +   SWLLTTYLD+DLRISR D G +FV  +EGS LL
Sbjct:  260 FKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLKQSLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGD-GGLFVLAREGSSLL 358          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PAP3_ARATH (Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.216e-20
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 302
            F+EG +  P +  S+ LPE+V   GQ+I LS  K  L+ +QD A+++++ +S QPPLK     +   SWLLTTYLD+DLRISR D G +FV  +EGS LL
Sbjct:  276 FKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGD-GGLFVLAREGSSLL 374          
BLAST of FC923773 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.411e-18
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:    3 FEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 302
            F+EG +  P++   + LPEN+   GQ++ L P    L  +++  +++++ IS Q PLK  I      SWL+TTYLD+DLRISR D G +FV  +EGS LL
Sbjct:  258 FKEGSLQPPEIKSKIDLPENINIFGQQLSLGPLLQSLGPLENVVANISRVISGQSPLKIPIPGERTSSWLITTYLDKDLRISRGD-GGLFVLAREGSSLL 356          
The following BLAST results are available for this feature:
BLAST of FC923773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP3_BRACM1.252e-2050.00Plastid lipid-associated protein 3, chloroplastic ... [more]
PAP3_ARATH6.216e-2049.00Probable plastid-lipid-associated protein 3, chlor... [more]
PG1_PEA3.411e-1843.00Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31708G07EF StrClemenN Citrus clementina cDNA clone C31708G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923773 ID=FC923773; Name=FC923773; organism=Citrus clementina; type=EST; length=556bp
AGTTCGAGGAAGGTGTCATTGGGACTCCTCAGGTAACTGATTCACTAGTG
TTACCGGAAAATGTTGAATTCTTGGGACAAAAGATTGATCTCTCACCCTT
CAAAGGCATACTCTCTTCAGTCCAAGACACAGCTTCATCTGTTGCAAAGA
CCATTTCTAGCCAACCACCTTTGAAGTTCTCTATCTCTAACAGCAATGCT
CAATCATGGTTGCTAACCACATACCTTGATGAAGATCTTCGGATTTCAAG
GGCAGATGCTGGCAGCGTCTTTGTTTTCATCAAGGAAGGAAGCCCCCTCT
TGATGCCATGAATGCACACCCAAATGGTCACTCCTACGGTATGGTAATAT
TGAATAAAGACTTGAACGTGTTGCTGCTTTCTAAGTATATACAAGTAATG
GAATGATAACATCGGTGTTACTAGATCTGCAGCTAGATACCAGTGCAGTA
GATTACAAAGTAGGAAGTGAGTAAATACTAAATAATTTTTTGTGCCCCCT
AATCTGTCTTAGTAGTTGAACTTGTGTGTTCAATTAAATATAATTATTTG
AAATTC
back to top