FC923838

Overview
NameFC923838
Unique NameFC923838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: VF369_IIV6 (Probable RAD2-like endonuclease 369L OS=Invertebrate iridescent virus 6 GN=IIV6-369L PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 2
Query:    8 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH----LMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 394
            +++T +  +  K LLK+M  P ++AP EAEA CA L K   ++ +AS D D L +G    +       +D  ++   +       +L +L+L   +F+D CI+ G DY D+I  IG   + +LI+    IE +
Sbjct:  171 IRITNRDYEKLKILLKIMNTPFIQAPMEAEAFCAYLYKKKIIHGIASNDSDILAYGCNLIVDFEFDVKIDEETKISKITYINYDYLLNKLDLQSSEFLDFCIMCGTDYNDNIYRIGAVKSYELIKVQKCIENV 303          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN_HALSA (Flap structure-specific endonuclease OS=Halobacterium salinarium GN=fen PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 56/164 (34.15%), Postives = 82/164 (50.00%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 490
            RT ++T   ++  + L  L+ +P VEAP+E EAQ A + ++      A S+D D L  G+P  LR L   SS    +M+F+    L E +LT +Q +D+ IL G D+   I G G  TAL  I +HG +  +L     E   +         R LF  P+V  D
Sbjct:  125 RTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLLGSPVTLRQLT--SSGHPELMDFDAT--LAEHDLTWEQLVDVGILCGTDFNPGIDGFGPTTALDAIGEHGDLWDVLA---AEGEHVAHG---DRIRELFLNPDVTDD 278          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN_HALS3 (Flap structure-specific endonuclease OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fen PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 56/164 (34.15%), Postives = 82/164 (50.00%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 490
            RT ++T   ++  + L  L+ +P VEAP+E EAQ A + ++      A S+D D L  G+P  LR L   SS    +M+F+    L E +LT +Q +D+ IL G D+   I G G  TAL  I +HG +  +L     E   +         R LF  P+V  D
Sbjct:  125 RTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLLGSPVTLRQLT--SSGHPELMDFDAT--LAEHDLTWEQLVDVGILCGTDFNPGIDGFGPTTALDAIGEHGDLWDVLA---AEGEHVAHG---DRIRELFLNPDVTDD 278          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: RAD2_YEAST (DNA repair protein RAD2 OS=Saccharomyces cerevisiae GN=RAD2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 50/214 (23.36%), Postives = 96/214 (44.86%), Query Frame = 2
Query:   11 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ------------------------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 580
            +VT     + + LL   G+P + AP EAEAQCA L +   V  + ++D D   FG  +  +++      K  V  ++   IL+ L L     I+L  L G DY + ++G+G  +++++I + G+++   +  N  ++                         + +D+P       +  PEV  D +     W  PD + L +F+ ++ G+  ++
Sbjct:  766 EVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF---HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDDDFPSVMVYDAYMRPEV--DHDTTPFVWGVPDLDMLRSFMKTQLGWPHEK 974          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_DICDI (Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 2
Query:   50 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE----LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ 448
            L+ + V  + AP EA+AQ   L  +GQV A+ +ED D + FGA   +   MD       +   ++    ++    ++        +CILSGCDY  S+ G+G +T+ KL++QH  IE + + + RE+    +++  Q
Sbjct:  137 LRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLVAFGATHII-FKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREKSNFSQEYEQQ 272          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: UVH3_ARATH (DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 2
Query:   35 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 367
            +C+ LL++ G+P + AP EAEAQCA + +S  V  + ++D D   FGA    +++ D   RK  V  + +  I +EL L+ D+ I + +L G DY + I GIG   A++++
Sbjct:  928 ECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFD--DRKY-VETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVV 1035          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_DANRE (Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 370
            R+V +T     D  R  +  GV  V AP EA+AQ A L KS    AV +ED D L FG  + +   MD     + + +  + +     N+ T ++F  +CILSGCDY  S+ GIG   A KL+R
Sbjct:  121 RSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGCKKVILK-MDKQGNGLEIEQCHLGRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLR 243          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_MOUSE (Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 439
            R++ +T        +  + +GV  + AP EA+AQ A L K+G V AV +ED D L FG  + +   MD     + V      + K L ++  T ++F  +CILSGCDY  S+RGIG   A K++R   +  I  +++ I    R    +PED+
Sbjct:  121 RSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDY 271          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: GEN_DROME (Flap endonuclease GEN OS=Drosophila melanogaster GN=Gen PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 43/125 (34.40%), Postives = 63/125 (50.40%), Query Frame = 2
Query:   38 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM-----DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETI 394
            C+ LL  MG+  V+ P EAEA CA L K G V  V S+D D   +GA R  R+         ++    V  +++ +I   ++    + I + +L GCDYC D I GIG    LKL  ++   E +
Sbjct:  126 CETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL 250          
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_YEAST (Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae GN=EXO1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   53 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 439
            KL G+  + AP EA++Q   L +   V  + SED D L FG  R +  L D     + +      K+ ++    +LT ++ I +  LSGCDY + I  +G  TA+KL+R+  +IE I+ +I RE +  IP+ +
Sbjct:  138 KLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITKLND-YGECLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYTNGIPKVGLITAMKLVRRFNTIERIILSIQREGKLMIPDTY 269          
The following BLAST results are available for this feature:
BLAST of FC923838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
VF369_IIV61.864e-1331.58Probable RAD2-like endonuclease 369L OS=Invertebra... [more]
FEN_HALSA1.864e-1334.15Flap structure-specific endonuclease OS=Halobacter... [more]
FEN_HALS31.864e-1334.15Flap structure-specific endonuclease OS=Halobacter... [more]
RAD2_YEAST9.250e-1323.36DNA repair protein RAD2 OS=Saccharomyces cerevisia... [more]
EXO1_DICDI1.208e-1230.66Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 ... [more]
UVH3_ARATH2.691e-1236.04DNA repair protein UVH3 OS=Arabidopsis thaliana GN... [more]
EXO1_DANRE4.591e-1237.90Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1[more]
EXO1_MOUSE7.830e-1233.99Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2[more]
GEN_DROME1.336e-1134.40Flap endonuclease GEN OS=Drosophila melanogaster G... [more]
EXO1_YEAST1.744e-1133.83Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae... [more]

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Properties
Property NameValue
Genbank descriptionC31709D12EF StrClemenN Citrus clementina cDNA clone C31709D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923838 ID=FC923838; Name=FC923838; organism=Citrus clementina; type=EST; length=711bp
GCGAACTGTAAAGGTGACAAAGCAGCACAATGATGACTGCAAAAGACTTC
TAAAACTCATGGGAGTGCCTGTAGTTGAGGCTCCTTCTGAAGCAGAAGCC
CAGTGTGCTGCTCTTTGCAAATCAGGACAGGTTTATGCTGTGGCTTCTGA
AGACATGGATTCCCTAACTTTTGGTGCTCCTAGATTTCTTCGCCATTTGA
TGGATCCTAGCTCAAGAAAAATACCAGTCATGGAGTTTGAAGTTGCAAAG
ATTTTGGAGGAATTGAATCTTACCATGGATCAATTCATAGACTTGTGCAT
TCTCTCTGGATGTGATTACTGTGATAGTATTCGAGGAATTGGTGGACAAA
CTGCTTTGAAGCTCATTCGTCAACATGGCTCTATAGAGACTATACTAGAG
AACATAAACAGAGAAAGGTACCAAATTCCAGAGGATTGGCCTTATCAAGA
GGCACGACGGCTGTTTAAAGAACCTGAAGTTGTCACTGATGAAGAGCAAC
TTCAAATTAAATGGAGTGCTCCAGATGAAGAGGGGTTGATTAACTTTCTG
GTGAGTGAAAATGGGTTCAACAGTGACAGAGTAACAAAGGCAATAGAAAA
AATTAAAGCGGCTAAGAACAAGTCATCACAGGGACGACTTGAATCATTTT
TTAAACAGTTGCTAACACGTCTGCGCCCATTAGACGGAAGGACCAGAGAC
ACTCCTAAAGC
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