FC923838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: VF369_IIV6 (Probable RAD2-like endonuclease 369L OS=Invertebrate iridescent virus 6 GN=IIV6-369L PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13 Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 2 Query: 8 VKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRH----LMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETI 394 +++T + + K LLK+M P ++AP EAEA CA L K ++ +AS D D L +G + +D ++ + +L +L+L +F+D CI+ G DY D+I IG + +LI+ IE + Sbjct: 171 IRITNRDYEKLKILLKIMNTPFIQAPMEAEAFCAYLYKKKIIHGIASNDSDILAYGCNLIVDFEFDVKIDEETKISKITYINYDYLLNKLDLQSSEFLDFCIMCGTDYNDNIYRIGAVKSYELIKVQKCIENV 303
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN_HALSA (Flap structure-specific endonuclease OS=Halobacterium salinarium GN=fen PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13 Identity = 56/164 (34.15%), Postives = 82/164 (50.00%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 490 RT ++T ++ + L L+ +P VEAP+E EAQ A + ++ A S+D D L G+P LR L SS +M+F+ L E +LT +Q +D+ IL G D+ I G G TAL I +HG + +L E + R LF P+V D Sbjct: 125 RTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLLGSPVTLRQLT--SSGHPELMDFDAT--LAEHDLTWEQLVDVGILCGTDFNPGIDGFGPTTALDAIGEHGDLWDVLA---AEGEHVAHG---DRIRELFLNPDVTDD 278
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: FEN_HALS3 (Flap structure-specific endonuclease OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fen PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13 Identity = 56/164 (34.15%), Postives = 82/164 (50.00%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVA-SEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQEARRLFKEPEVVTD 490 RT ++T ++ + L L+ +P VEAP+E EAQ A + ++ A S+D D L G+P LR L SS +M+F+ L E +LT +Q +D+ IL G D+ I G G TAL I +HG + +L E + R LF P+V D Sbjct: 125 RTQRLTPTIHETTRELFDLLDIPQVEAPAEGEAQAAYMTRTDDAVDYAGSDDYDCLLLGSPVTLRQLT--SSGHPELMDFDAT--LAEHDLTWEQLVDVGILCGTDFNPGIDGFGPTTALDAIGEHGDLWDVLA---AEGEHVAHG---DRIRELFLNPDVTDD 278
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: RAD2_YEAST (DNA repair protein RAD2 OS=Saccharomyces cerevisiae GN=RAD2 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13 Identity = 50/214 (23.36%), Postives = 96/214 (44.86%), Query Frame = 2 Query: 11 KVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQ------------------------IPEDWPYQEARRLFKEPEVVTDEEQLQIKWSAPDEEGLINFLVSENGFNSDR 580 +VT + + LL G+P + AP EAEAQCA L + V + ++D D FG + +++ K V ++ IL+ L L I+L L G DY + ++G+G +++++I + G+++ + N ++ + +D+P + PEV D + W PD + L +F+ ++ G+ ++ Sbjct: 766 EVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMF---HEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKGMGPVSSIEVIAEFGNLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDDDFPSVMVYDAYMRPEV--DHDTTPFVWGVPDLDMLRSFMKTQLGWPHEK 974
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_DICDI (Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12 Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 2 Query: 50 LKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEE----LNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRERYQIPEDWPYQ 448 L+ + V + AP EA+AQ L +GQV A+ +ED D + FGA + MD + ++ ++ ++ +CILSGCDY S+ G+G +T+ KL++QH IE + + + RE+ +++ Q Sbjct: 137 LRALKVEYLVAPYEADAQLTYLSITGQVDAIITEDSDLVAFGATHII-FKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREKSNFSQEYEQQ 272
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: UVH3_ARATH (DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12 Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 2 Query: 35 DCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLI 367 +C+ LL++ G+P + AP EAEAQCA + +S V + ++D D FGA +++ D RK V + + I +EL L+ D+ I + +L G DY + I GIG A++++ Sbjct: 928 ECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFD--DRKY-VETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIVNAIEVV 1035
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_DANRE (Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12 Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEELNL-TMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR 370 R+V +T D R + GV V AP EA+AQ A L KS AV +ED D L FG + + MD + + + + + N+ T ++F +CILSGCDY S+ GIG A KL+R Sbjct: 121 RSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNKSDIAQAVITEDSDLLAFGCKKVILK-MDKQGNGLEIEQCHLGRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLR 243
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_MOUSE (Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 2 RTVKVTKQHNDDCKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV--MEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIR--QHGSIETILENIN---RERYQIPEDW 439 R++ +T + + +GV + AP EA+AQ A L K+G V AV +ED D L FG + + MD + V + K L ++ T ++F +CILSGCDY S+RGIG A K++R + I +++ I R +PED+ Sbjct: 121 RSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNKAGIVQAVITEDSDLLAFGCKKVILK-MDQFGNGLEVDQARLGMCKQLGDV-FTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDY 271
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: GEN_DROME (Flap endonuclease GEN OS=Drosophila melanogaster GN=Gen PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11 Identity = 43/125 (34.40%), Postives = 63/125 (50.40%), Query Frame = 2 Query: 38 CKRLLKLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLM-----DPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYC-DSIRGIGGQTALKLIRQHGSIETI 394 C+ LL MG+ V+ P EAEA CA L K G V V S+D D +GA R R+ ++ V +++ +I ++ + I + +L GCDYC D I GIG LKL ++ E + Sbjct: 126 CETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL 250
BLAST of FC923838 vs. ExPASy Swiss-Prot
Match: EXO1_YEAST (Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae GN=EXO1 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11 Identity = 45/133 (33.83%), Postives = 72/133 (54.14%), Query Frame = 2 Query: 53 KLMGVPVVEAPSEAEAQCAALCKSGQVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEVAKILEEL---NLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINRE-RYQIPEDW 439 KL G+ + AP EA++Q L + V + SED D L FG R + L D + + K+ ++ +LT ++ I + LSGCDY + I +G TA+KL+R+ +IE I+ +I RE + IP+ + Sbjct: 138 KLNGIRYIVAPFEADSQMVYLEQKNIVQGIISEDSDLLVFGCRRLITKLND-YGECLEICRDNFIKLPKKFPLGSLTNEEIITMVCLSGCDYTNGIPKVGLITAMKLVRRFNTIERIILSIQREGKLMIPDTY 269 The following BLAST results are available for this feature:
BLAST of FC923838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923838 ID=FC923838; Name=FC923838; organism=Citrus clementina; type=EST; length=711bpback to top |