FC923847

Overview
NameFC923847
Unique NameFC923847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.453e-64
Identity = 116/214 (54.21%), Postives = 151/214 (70.56%), Query Frame = 1
Query:  115 MSLIFSLFVGLL-MVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGF 747
            +SL+F+L V    +   V +  FD  +  +W      V  +G+ L L+LD  SG+GF +K +YLFGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E DFEFLGN TG+PY + TNVY  G G+REQ+  LWFDPT +FHTYS+LWN   +VF+VD+ P+R   NL+H GI +PK Q M +YSS+WNAD WAT+GG VKTDWS APF ASYR F
Sbjct:    8 LSLLFTLTVSTTTLFSPVFAGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNF 221          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.595e-64
Identity = 117/217 (53.92%), Postives = 154/217 (70.97%), Query Frame = 1
Query:  103 SMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGF 747
            +M+  S I    +   M+  VS A F    + +W     Q   +GD L L+LD  SG+GF SK++YLFGK+ +QIKLV G+SAGTVTA+Y+ S G   +E DFEFLGN +G+PY + TNV+  G G+REQ+  LWFDPT +FHTYS+LWN ++++F VD TPIR   N+E +G  FPK+Q M +YSS+WNA++WAT+GG VKTDWS APF ASYRGF
Sbjct:    2 AMISYSTIVVALLASFMICSVS-ANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGF 217          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.920e-64
Identity = 115/214 (53.74%), Postives = 155/214 (72.43%), Query Frame = 1
Query:  115 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFE 750
            ++ +  LF+ L++   VS A F    + +W      ++ +G+ L L+LD  SG+GF SK++YLFGKVS+Q+KLV G+SAGTVT  Y+ S G   +E DFEFLGN++GEPY + TNVY  G G++EQ+  LWFDPT  FHTY++LWN ++++F VD TPIR   N+E  G  FPK++ M +YSS+WNADDWAT+GG VKTDWS APF ASYRGF+
Sbjct:    3 ITYLLPLFLSLIITSSVS-ANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQ 215          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.923e-63
Identity = 116/221 (52.49%), Postives = 160/221 (72.40%), Query Frame = 1
Query:  100 SSMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHV-QYDGD-TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            S  V  +L   LF  L    +   AKF+D ++ +W+  H+ Q DG   ++L LD  SG GFASK +YLFG+VS++IKL+ GDSAGTVTAFYM+SD  +  +E DFEFLGN +G+PY VQTNV+ +G G+REQR++LWFDP+++FH Y++ WN  ++VF VD  PIRV+ N E + +P+P+ Q MGVYS++W ADDWAT+GG  K +WS APF A Y+ F++
Sbjct:    8 SRNVFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDI 228          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.923e-63
Identity = 112/207 (54.11%), Postives = 144/207 (69.57%), Query Frame = 1
Query:  133 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGF 747
            L   LL++  V++  F D +  +W          G  L   LD  SG+GF SK +YLFGK+ ++IKLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWATQGG+VKTDW++APF ASYR F
Sbjct:   12 LLASLLILIGVATGSFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSF 218          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.430e-63
Identity = 111/190 (58.42%), Postives = 140/190 (73.68%), Query Frame = 1
Query:  190 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            Y  +WAF+H +    G  L+L LD Y+G GF SK  YLFG  S+ IKL  GD+AG VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APF+ASYRGF +
Sbjct:   38 YVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHI 227          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.398e-63
Identity = 110/207 (53.14%), Postives = 147/207 (71.01%), Query Frame = 1
Query:  133 LFVGLLMVGLVSSAKFDDLYQTSWAFN--HVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGF 747
            L + LL++  +S+  F D +  +W     ++   G  L   LD  SG+GF SK +YLFGK+ +++KLV G+SAGTVTA+Y+SS G   +E DFEFLGN TG+PY++ TNV+  G GNRE +  LWFDPT +FHTY++LWN   ++FLVD  PIRV  N E  G+ +PK Q M +YSS+W ADDWATQGG+VKTDW++APF ASY+ F
Sbjct:   11 LLLSLLLLISLSAGSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYKSF 217          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.432e-62
Identity = 116/214 (54.21%), Postives = 147/214 (68.69%), Query Frame = 1
Query:  133 LFVGLLMVGLVSSAKFDDL-----YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            L V   MV  +   K  D+     Y  +WAF+H +    G  L+L LD Y+G GF SK  YLFG  S+ IKL  GD+AG VTAFY+SS    H+E DFEFLGN TG+P ++QTNV+  G GNREQR+ LWFDP+K +HTYS+LWN  Q+VF VD  PIR   N +  G+ FP +Q M +YSS+WNADDWAT+GG  KT+W++APFVASY+GF +
Sbjct:   15 LMVSSTMVMAIPPRKAIDVPFGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHI 228          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.168e-62
Identity = 108/190 (56.84%), Postives = 141/190 (74.21%), Query Frame = 1
Query:  190 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            Y+ SWA +H+++   G T  L LD  SGAGF SK  YLFG  S++++LVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G GNREQR+ LWFDPTK +H+YS+LWN   +V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+GG  KT+W++APF ASY  F +
Sbjct:   37 YEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHV 226          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.213e-61
Identity = 110/213 (51.64%), Postives = 155/213 (72.77%), Query Frame = 1
Query:  124 IFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            IF+L   + +      A F + ++ +W+ +H++   DG  ++L LD  +G GFASK KYLFG+VS++IKL+ GDSAGTVTAFYM+SD     +E DFEFLGN +G+PY VQTN++ +G G+REQR++LWFDP+ ++HTY++LW+ + +VF VD+ PIR + N E K I +P  Q MGVYS++W ADDWAT+GG  K DWS APF A Y+ F++
Sbjct:   17 IFTLLTLMFIRVSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDI 229          
The following BLAST results are available for this feature:
BLAST of FC923847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH25_ARATH4.453e-6454.21Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH7.595e-6453.92Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH9.920e-6453.74Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH7_ARATH4.923e-6352.49Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH4.923e-6354.11Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB6.430e-6358.42Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH13_ARATH8.398e-6353.14Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH1.432e-6254.21Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC4.168e-6256.84Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH1.213e-6151.64Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31709E09EF StrClemenN Citrus clementina cDNA clone C31709E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923847 ID=FC923847; Name=FC923847; organism=Citrus clementina; type=EST; length=759bp
GAGATCAGCATTTCAAAGTAGAAGCTTCAACTTCCCTCCACTTCACTGGG
CCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCATT
CTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTTTA
ATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAACAAG
CTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTTAACC
TCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGTTT
GGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGAAC
TGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAGTTCG
ATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCAAACC
AATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACCTCTG
GTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAACCAGC
GCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACTAAC
TTGGAGCACAAAGGAATTCCCTTCCCCAAGGACCAAGCCATGGGTGTGTA
CAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGGAAGGGTCA
AGACNGACTGGAGCCATGCACCTTTTGTTGCATCATACAGGGGCTTTGAA
ATGATGCAT
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