FC923847

Overview
NameFC923847
Unique NameFC923847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.107e-52
Identity = 101/223 (45.29%), Postives = 139/223 (62.33%), Query Frame = 1
Query:  124 IFSLFVGLLMV-----------GLVSSAKFDDLYQTSWAFNHVQ--YDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            IFS+FV  L +           G+     F   Y  +W  +HV   + G+ + L +D  SG GF SK  Y  G   ++IK+  G++ G VTAFY++S G  H+E DFEFLGN  G+P  +QTN+++NG GNRE+R  LWF+PTK +HTY LLWN  Q+VF VD  PIRV+ N    G+ +P  + M V +S+WN DDWAT GGR K +WS++PF+A +R F +
Sbjct:    6 IFSVFVVTLWIIRVDARVFGGRGIEKFVTFGQNYIVTWGQSHVSTLHSGEEVDLYMDQSSGGGFESKDAYGSGLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN--ENGVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFAL 225          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.323e-51
Identity = 97/217 (44.70%), Postives = 146/217 (67.28%), Query Frame = 1
Query:  115 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY---DGDT--LKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSS-DGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGF 747
            +S+  ++ V  L     ++A F + +    A +HV+    DG T  + L LD  SG+GF SK  YLFG+ S+Q+KLVGG+SAGTVT+FY+SS +G  H+E D EF+GN +G PY++ TNV+ NG G +E +  LWFDPT +FHTY ++WN + ++F VD+ P+R  T  ++  + +P+ + M +++++W+   WAT+ G VK DWS APFV SYRG+
Sbjct:    7 LSVAAAVAVSWLAASSAAAAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVR--TFKKYDDLAYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGY 221          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.646e-51
Identity = 97/213 (45.54%), Postives = 137/213 (64.32%), Query Frame = 1
Query:  115 MSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGF 747
            +S++F +F          +  FD  Y  +W  +H+     G  ++L++D  SG+GF SKS Y  G   ++IKL   DSAG VTAFY++S G  H+E DFEFLGN  G+P  +QTNV+ NG G REQ+   WFDPT  FHTY +LWN  Q+VF VD+ PIRV  N++  G+ +P  + M + +S+WN ++WAT GG+ K +W++APF A Y+GF
Sbjct:   11 VSVLFLMFTANARARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGF 222          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.391e-49
Identity = 97/196 (49.49%), Postives = 133/196 (67.86%), Query Frame = 1
Query:  166 SSAKFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGF 747
            S   FDD Y  +W  N+V     G  ++L+LD+ SG+GF SK+ Y  G   I+IK+   D++G VTAFY++S G  H+E DFEFLGN  G+   VQTNV+ NG GNREQ+L LWFDP+K+FHTY++LWN  Q+V  VD  P+RV  N   +G+ +P  + M V  S+WN ++WAT GG+ K +WS APF A+++GF
Sbjct:   35 SKVGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGF 228          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.318e-43
Identity = 90/205 (43.90%), Postives = 130/205 (63.41%), Query Frame = 1
Query:  163 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR-----EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            V ++ FD  ++T W   H + + D + L LD  +G+GF S   Y  G     IKL  G +AG  T+ Y+S++  +   H+E D EFLG T G+PY +QTNV+V G G+R     E +  LWFDPT++FH Y++LWN  Q+VF VD+ PIR + N +++ I FP  + M VY SIW+A DWAT+ GR+K D+ + PFVA Y+ F++
Sbjct:   34 VPTSPFDREFRTLWGSQHQRREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY-NRKNEAI-FP-TRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKL 235          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.648e-40
Identity = 82/206 (39.81%), Postives = 120/206 (58.25%), Query Frame = 1
Query:  163 VSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN---HNEFDFEFLGNTTGEPYLVQTNVYVNGVGN-----REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEMM 756
            V S  F   ++  W   H + D + L + LD  SG+GF S   +  G     IKL  G +AG +T+ Y+S++  +   H+E D EFLG T G+PY +QTNVY+ G G+     RE +  LWFDPTK+FH Y++LW+ R+++FLVD+ PIR +        P    + M +Y SIW+A  WAT+ G+ K D+ + PF A Y  F+ +
Sbjct:   38 VGSLNFYKGFRNLWGPQHQRMDQNALTIWLDRTSGSGFKSVKPFRSGYFGANIKLQPGYTAGVITSLYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKAL 240          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.225e-39
Identity = 89/222 (40.09%), Postives = 130/222 (58.56%), Query Frame = 1
Query:  133 LFVGLLMVGLVSSAKFDDLYQTSWAFNHVQYDGD----------TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYRGFEM 753
            +F+ +L + L SS+ F +L   S+  +     GD          +++L LD Y+G+GF S + Y  G  S  IKL    +AG V AFY S+       H+E D EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     +  G  +P  + M +Y++IW+A DWAT GG+ K ++  APFVA ++ F +
Sbjct:    9 IFILILCLCLRSSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSL 229          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.475e-39
Identity = 90/218 (41.28%), Postives = 127/218 (58.26%), Query Frame = 1
Query:  106 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGN--REQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASY 738
            +V MSL  SL  G  +  L    +FD+ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    SAG V AFY+S+      NH+E DFEFLGN  G  + +QTN+Y NG  +  RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +YS+IW+   WAT GG+   ++ +AP+V+ +
Sbjct:    8 LVFMSLFTSLVSGFALQKL-PLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQF 223          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.104e-38
Identity = 87/218 (39.91%), Postives = 126/218 (57.80%), Query Frame = 1
Query:  106 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGV--GNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASY 738
            +V MSL   L  G  +  L  ++ F++ Y   +   +  V  DG +++L LD  +G+GF S   YL G  S  IKL    +AG V AFYMS+      NH+E DFEFLGN   + + VQTN+Y NG     RE+R +LWFDPT++FH YS+LW+   ++F VD  PIR        G  FP  + M +Y++IW+   WAT GG+   ++ +AP++A +
Sbjct:    8 LVFMSLFSGLVSGFALQNLPITS-FEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARF 223          
BLAST of FC923847 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.221e-37
Identity = 79/177 (44.63%), Postives = 112/177 (63.28%), Query Frame = 1
Query:  226 DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNR--EQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGRVKTDWSHAPFVASYR 741
            D  +++L LD Y+G+GF S S Y  G  S  IKL G  +AG V AFY S+      +H+E D EFLGN  G+P+  QTN+Y NG  NR  E+R  LWFDP+KEFH YS+LW   +++F VD+ PIR     E     +P+ + M +Y++IW+A  WAT GG+   D++ +PFV+ ++
Sbjct:   58 DDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFK 233          
The following BLAST results are available for this feature:
BLAST of FC923847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH3_ARATH5.107e-5245.29Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ORYSJ4.323e-5144.70Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH2_ARATH5.646e-5145.54Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH1.391e-4949.49Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH3.318e-4343.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH7.648e-4039.81Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH2.225e-3940.09Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH6.475e-3941.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH1.104e-3839.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH1.221e-3744.63Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31709E09EF StrClemenN Citrus clementina cDNA clone C31709E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923847 ID=FC923847; Name=FC923847; organism=Citrus clementina; type=EST; length=759bp
GAGATCAGCATTTCAAAGTAGAAGCTTCAACTTCCCTCCACTTCACTGGG
CCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCATT
CTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTTTA
ATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAACAAG
CTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTTAACC
TCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGTTT
GGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGAAC
TGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAGTTCG
ATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCAAACC
AATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACCTCTG
GTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAACCAGC
GCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACTAAC
TTGGAGCACAAAGGAATTCCCTTCCCCAAGGACCAAGCCATGGGTGTGTA
CAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGGAAGGGTCA
AGACNGACTGGAGCCATGCACCTTTTGTTGCATCATACAGGGGCTTTGAA
ATGATGCAT
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