FC923855

Overview
NameFC923855
Unique NameFC923855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINL4_ARATH (E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 2 
Query:  353 CRKATTGFSGNLGTTSNNDVHELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLK-HEKTVTIVRTIAP 697
            CRK       ++   ++N    +LECP C + +  PI+QC NGH  C  C  +++  C  C+  +G++RC A+EKV ++  + C   I+GC+    Y ++L+ HEK         P
Sbjct:   65 CRKRRVSSPKSVTLPNSN----VLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCKLPIGDVRCRAMEKVIKAGLVSCSNAIYGCKQSTTYGNQLQSHEKVCVFAPCSCP 176
[Close]
BLAST of FC923855 vs. ExPASy Swiss-Prot
Match: SINL8_ARATH (E3 ubiquitin-protein ligase SINA-like 8 OS=Arabidopsis thaliana GN=At5g37900 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 2 
Query:  416 ELLECPVCLNLMYPPIYQCPNGHTLCSSCKARVRTGCPTCRHELGNIRCLALEKVAESLELPCRYQIWGCQDIFPYYSKLKHEK 667
            ++L+CP+C   +  PI+QC NGH  CSSC  ++R  CP C           +E + ES+ + C   ++GC + F Y  K  HE+
Sbjct:   31 DILDCPICCEGLTCPIFQCENGHLACSSCCPKLRNKCPAC----------PMENILESILVTCPNDMFGCTESFLYGKKSTHEE 104
The following BLAST results are available for this feature:
BLAST of FC923855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SINL4_ARATH1.169e-1231.90E3 ubiquitin-protein ligase SINA-like 4 OS=Arabido... [more]
SINL8_ARATH2.879e-1135.71E3 ubiquitin-protein ligase SINA-like 8 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC31709F05EF StrClemenN Citrus clementina cDNA clone C31709F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923855 ID=FC923855; Name=FC923855; organism=Citrus clementina; type=EST; length=698bp
GGTCTTTGTTTTTTGTTTTTTCATTTTTGGGTCCTAAATGGAGAAATAAT
TGAGTCCCAAAGTTTTCATTAATTGAAATGATTGAATCTTCAATCGTTTC
TTAGCTGCATTTCTCATCTGGGTTTGTTTCTTAAGGCAAAACCAGCTAAA
AAGAAAGAAAGTGGTATCATTTGCAGTGAAGATTATGATGCTGATTTCGA
TTTGGGAACGGAGAGACATATAGTAGTAGCAGTTTCTAAGGGAAGGCAGC
ATGGCTCCTGGAGGAGGAATATGCAAGGAGGTGATTGAGTCTAGCATTGA
GTTTTCAGATTATGAAATGGCAACTTCTAGTGTGGAGTTGAGGGGTTCCC
CTTGTAGGAAAGCTACAACTGGTTTCAGTGGAAATCTTGGAACAACATCA
AATAATGATGTGCACGAGCTACTTGAGTGTCCCGTTTGCTTGAATTTAAT
GTACCCTCCAATTTACCAGTGTCCAAATGGTCACACCTTGTGCTCAAGTT
GCAAGGCTAGAGTACGCACCGGTTGTCCAACCTGCCGCCATGAACTTGGA
AATATAAGGTGCCTGGCATTGGAGAAAGTAGCTGAGTCGCTGGAACTCCC
TTGCAGATACCAGATTTGGGGTTGTCAAGATATATTCCCCTATTACAGCA
AGCTAAAGCATGAAAAAACTGTAACTATCGTCCGTACAATTGCCCCTA
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