FC923856

Overview
NameFC923856
Unique NameFC923856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 65/197 (32.99%), Postives = 99/197 (50.25%), Query Frame = 3
Query:  123 THHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 707
            + HR G  +  +R +DF      + G I  I +DP R   +    +        +K+  +  +GM  G  V    +A + +GN LPL ++P G  + NVE   G  G  AR +G  A +I+   +     ++LPSG  +++   C A IGQV       + + KAG+   ++  KR   PKVRGV MNP++HPHGGG
Sbjct:   51 SRHRGGGHKRIYRKIDFLRDKKDIFGRIATIEYDPNRNTFICLTYYE-----DGEKKYILYPQGMRIGDSVVSSTEAPISIGNALPLTNMPLGTAIHNVEITPGKGGQLARAAGAVAKIIA--KEGRLATLRLPSGEVRLISQKCLATIGQVGNSDANNRTIGKAGS--KRWLGKR---PKVRGVVMNPIDHPHGGG 235          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_THEM4 (50S ribosomal protein L2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 69/206 (33.50%), Postives = 98/206 (47.57%), Query Frame = 3
Query:  111 FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 728
            F+   H RK    +R +DF      +   +  I +DP R A +A + +        +K   +A + +  G  V  G  A +  GN LPL +IP G V+ NVE+  G  G  AR +G    +++   +     +++PSG  + VP  C A IG V       +   KAG    K R      P VRGVAMNPV+HPHGGG  +  GH
Sbjct:   53 FRGGGHKRK----YRIIDFKRDKVGIPAKVVSIEYDPNRTARIALLVYA-----DGEKRYILAPQDLNVGDMVMNGPDAEIKPGNALPLENIPVGTVIHNVEYIPGKGGQIARSAGTSCQLMA--KEGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRK-----PHVRGVAMNPVDHPHGGGEGRGKGH 242          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_RHOFD (50S ribosomal protein L2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 66/210 (31.43%), Postives = 102/210 (48.57%), Query Frame = 3
Query:   78 IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 707
            I  + KG G     H HH      +R +DF      +   +  I +DP R A +A V +        ++   +A  G+  G  +  G +A + VGN LP+R+IP G++V  +E  +G      R +G  A +++   +    ++++ SG  + +   CRA +GQVA    + + L KAG    K        P VRGV MNPV+HPHGGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFLRTKDGIPAKVERIEYDPNRSAHIALVCYA-----DGERRYIIAPRGLEVGASIMSGAEAPIRVGNTLPIRNIPVGSIVHCIELQIGKGAQIVRSAGTSATLLAR--EGIYAQVRMRSGEVRKIHIECRATLGQVANEEHSLRRLGKAGAKRWK-----GIRPTVRGVVMNPVDHPHGGG 235          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 70/202 (34.65%), Postives = 96/202 (47.52%), Query Frame = 3
Query:  123 THHRKGPAR---FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 707
            T  R+G      +R +DF      +   +  I +DP R A +A + ++       +K   +   G+  G  +  G ++    GN LPL  IP G  V NVE   G  G   R +G  A V++   + D   +KLPSG  +++   C A IGQV   G T+   L AG A       RN W    PKVRG  MNPV+HPHGGG
Sbjct:   50 TSRRRGGGHKQLYRIIDFKRDKHNIPAKVAAIEYDPNRNARIALLYYQ-----DGEKRYILHPNGLKVGTIIISGPESPFEDGNALPLSRIPLGTSVHNVEMTPGKGGQIVRAAGASAQVVA--KEGDYVTLKLPSGEVRLIRRDCYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHPHGGG 235          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_MYCHP (50S ribosomal protein L2 OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 70/218 (32.11%), Postives = 105/218 (48.17%), Query Frame = 3
Query:   90 RKGAGSVFKSHTHHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734
            + G  +  K  T H+ G  +  +R +DF  +   +   +  I +DP R A ++ V +R       +K   ++ +G+  GQ +  G    + VGN LPL +IPEG  V N+E      G+ AR +G  A ++  +       ++L SG  + V +  RA +G+V   G  E  L+  G A       R   P VRG AMNP +HPHGGG   Q IG  S
Sbjct:   41 KAGRNNQGKITTRHQGGRLKRFYRIIDFKRQKDGIPATVKTIEYDPNRSANISLVVYR-----DGEKRYILSPKGIKIGQVILSGDNVDIQVGNHLPLANIPEGTFVHNIELQPRQGGIIARSAGSSAQILGKDESGRYVILRLKSGEVRKVLAINRATVGEV---GNEEHSLVNIGKAGR--NRLRGIRPTVRGSAMNPNDHPHGGGEGRQPIGRKS 248          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CYAP4 (50S ribosomal protein L2 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 70/215 (32.56%), Postives = 99/215 (46.05%), Query Frame = 3
Query:   75 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 707
            VI ++R+G G        H++    +R +DF      + G +  + +DP R A ++ V +        +K   +    +  G  +  G  A + VGN LPL  IP G  V NVE   G  G   R +G  A V++   + D   +KLPSG  ++    C A IGQ+         + KAG         RN W    PKVRG  MNPV+HPHGGG
Sbjct:   48 VITSRRRGGG--------HKR---LYREIDFRRNKLSVPGTVLTVEYDPNRNARISLVQYE-----DGEKRYILHPRNLAVGAVIAAGPDAAIEVGNALPLSKIPLGTGVHNVEITPGRGGQMVRAAGAMAQVVA--KEGDMVTLKLPSGEVRLFRKECYATIGQIGNVDVNNISIGKAG---------RNRWKGRRPKVRGSVMNPVDHPHGGG 235          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CUPTR (50S ribosomal protein L2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 70/212 (33.02%), Postives = 106/212 (50.00%), Query Frame = 3
Query:   78 IRAQRKGAGSVFKSHTHHRKGPARFRSLDF--GERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 707
            I  + KG G     H HH      +R +DF   +++G +   +  + +DP R A +A V F        ++   +A +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G     AR +G  AV+++   +    +++L SG  + V   CRA +G+V     + + + KAG         R   P VRGV MNPV+HPHGGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNDKDG-IPAKVERLEYDPNRSANIALVVFA-----DGERRYIIATKGMVAGQQLLNGSEAPIKAGNNLPIRNIPVGTTINNVEMLPGKGAQIARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATVGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CLOBM (50S ribosomal protein L2 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  147 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734
            ++R +DF      +   +  I +DP R A +A V +        +K   +A  G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G      R +G+ A +++   + D ++++LPSG  + +   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:   61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYA-----DGEKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CLOBL (50S ribosomal protein L2 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  147 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734
            ++R +DF      +   +  I +DP R A +A V +        +K   +A  G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G      R +G+ A +++   + D ++++LPSG  + +   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:   61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYA-----DGEKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CLOBK (50S ribosomal protein L2 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 3
Query:  147 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734
            ++R +DF      +   +  I +DP R A +A V +        +K   +A  G+  G  V  G ++ + VGN LP+R+IP G V+ N+E   G      R +G+ A +++   + D ++++LPSG  + +   CRA IG V+        + KAG   H         P VRG  MNP +HPHGGG     IGH S
Sbjct:   61 KYRVIDFKRNKDNISAKVVSIEYDPNRTAFIALVVYA-----DGEKRYMIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAPGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245          
The following BLAST results are available for this feature:
BLAST of FC923856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_ANTFO1.024e-2032.9950S ribosomal protein L2, chloroplastic OS=Anthoce... [more]
RL2_THEM41.337e-2033.5050S ribosomal protein L2 OS=Thermosipho melanesien... [more]
RL2_RHOFD1.337e-2031.4350S ribosomal protein L2 OS=Rhodoferax ferrireduce... [more]
RL2_NOSP71.337e-2034.6550S ribosomal protein L2 OS=Nostoc punctiforme (st... [more]
RL2_MYCHP1.337e-2032.1150S ribosomal protein L2 OS=Mycoplasma hominis (st... [more]
RL2_CYAP41.337e-2032.5650S ribosomal protein L2 OS=Cyanothece sp. (strain... [more]
RL2_CUPTR1.337e-2033.0250S ribosomal protein L2 OS=Cupriavidus taiwanensi... [more]
RL2_CLOBM1.337e-2032.4950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBL1.337e-2032.4950S ribosomal protein L2 OS=Clostridium botulinum ... [more]
RL2_CLOBK1.337e-2032.4950S ribosomal protein L2 OS=Clostridium botulinum ... [more]

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Properties
Property NameValue
Genbank descriptionC31709F06EF StrClemenN Citrus clementina cDNA clone C31709F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923856 ID=FC923856; Name=FC923856; organism=Citrus clementina; type=EST; length=756bp
GGTCCCAGCCGCACTTGTCAAAAACCCCAAAACCCTAGACAGAGAGTCAC
AGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCGTAAGGGAGC
GGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCCCGGCCAGGT
TCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAGGGAGTCATA
ACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCAC
GTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGTTCGTGGCGG
CTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGGAAGGCGACT
TTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCTGAAGGAGCGGT
GGTTTGTAATGTGGAGCATCACGTGGGTGATCGCGGTGTCTTTGCCAGAT
GTTCGGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACACT
ACTAGGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTG
CCGTGCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCAT
TGTTGAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGC
TGGCCCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGG
TGGTGGTAACCACCAGCACATTGGGCATGCAAGTACGGTTCGCCGTGATG
CACCCC
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