FC923856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20 Identity = 65/197 (32.99%), Postives = 99/197 (50.25%), Query Frame = 3 Query: 123 THHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 707 + HR G + +R +DF + G I I +DP R + + +K+ + +GM G V +A + +GN LPL ++P G + NVE G G AR +G A +I+ + ++LPSG +++ C A IGQV + + KAG+ ++ KR PKVRGV MNP++HPHGGG Sbjct: 51 SRHRGGGHKRIYRKIDFLRDKKDIFGRIATIEYDPNRNTFICLTYYE-----DGEKKYILYPQGMRIGDSVVSSTEAPISIGNALPLTNMPLGTAIHNVEITPGKGGQLARAAGAVAKIIA--KEGRLATLRLPSGEVRLISQKCLATIGQVGNSDANNRTIGKAGS--KRWLGKR---PKVRGVVMNPIDHPHGGG 235
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_THEM4 (50S ribosomal protein L2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 69/206 (33.50%), Postives = 98/206 (47.57%), Query Frame = 3 Query: 111 FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGH 728 F+ H RK +R +DF + + I +DP R A +A + + +K +A + + G V G A + GN LPL +IP G V+ NVE+ G G AR +G +++ + +++PSG + VP C A IG V + KAG K R P VRGVAMNPV+HPHGGG + GH Sbjct: 53 FRGGGHKRK----YRIIDFKRDKVGIPAKVVSIEYDPNRTARIALLVYA-----DGEKRYILAPQDLNVGDMVMNGPDAEIKPGNALPLENIPVGTVIHNVEYIPGKGGQIARSAGTSCQLMA--KEGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRK-----PHVRGVAMNPVDHPHGGGEGRGKGH 242
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_RHOFD (50S ribosomal protein L2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 66/210 (31.43%), Postives = 102/210 (48.57%), Query Frame = 3 Query: 78 IRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 707 I + KG G H HH +R +DF + + I +DP R A +A V + ++ +A G+ G + G +A + VGN LP+R+IP G++V +E +G R +G A +++ + ++++ SG + + CRA +GQVA + + L KAG K P VRGV MNPV+HPHGGG Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFLRTKDGIPAKVERIEYDPNRSAHIALVCYA-----DGERRYIIAPRGLEVGASIMSGAEAPIRVGNTLPIRNIPVGSIVHCIELQIGKGAQIVRSAGTSATLLAR--EGIYAQVRMRSGEVRKIHIECRATLGQVANEEHSLRRLGKAGAKRWK-----GIRPTVRGVVMNPVDHPHGGG 235
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_NOSP7 (50S ribosomal protein L2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 70/202 (34.65%), Postives = 96/202 (47.52%), Query Frame = 3 Query: 123 THHRKGPAR---FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 707 T R+G +R +DF + + I +DP R A +A + ++ +K + G+ G + G ++ GN LPL IP G V NVE G G R +G A V++ + D +KLPSG +++ C A IGQV G T+ L AG A RN W PKVRG MNPV+HPHGGG Sbjct: 50 TSRRRGGGHKQLYRIIDFKRDKHNIPAKVAAIEYDPNRNARIALLYYQ-----DGEKRYILHPNGLKVGTIIISGPESPFEDGNALPLSRIPLGTSVHNVEMTPGKGGQIVRAAGASAQVVA--KEGDYVTLKLPSGEVRLIRRDCYATIGQV---GNTDARNLSAGKA------GRNRWKGRRPKVRGSVMNPVDHPHGGG 235
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_MYCHP (50S ribosomal protein L2 OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 70/218 (32.11%), Postives = 105/218 (48.17%), Query Frame = 3 Query: 90 RKGAGSVFKSHTHHRKGPAR--FRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734 + G + K T H+ G + +R +DF + + + I +DP R A ++ V +R +K ++ +G+ GQ + G + VGN LPL +IPEG V N+E G+ AR +G A ++ + ++L SG + V + RA +G+V G E L+ G A R P VRG AMNP +HPHGGG Q IG S Sbjct: 41 KAGRNNQGKITTRHQGGRLKRFYRIIDFKRQKDGIPATVKTIEYDPNRSANISLVVYR-----DGEKRYILSPKGIKIGQVILSGDNVDIQVGNHLPLANIPEGTFVHNIELQPRQGGIIARSAGSSAQILGKDESGRYVILRLKSGEVRKVLAINRATVGEV---GNEEHSLVNIGKAGR--NRLRGIRPTVRGSAMNPNDHPHGGGEGRQPIGRKS 248
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CYAP4 (50S ribosomal protein L2 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 70/215 (32.56%), Postives = 99/215 (46.05%), Query Frame = 3 Query: 75 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGGG 707 VI ++R+G G H++ +R +DF + G + + +DP R A ++ V + +K + + G + G A + VGN LPL IP G V NVE G G R +G A V++ + D +KLPSG ++ C A IGQ+ + KAG RN W PKVRG MNPV+HPHGGG Sbjct: 48 VITSRRRGGG--------HKR---LYREIDFRRNKLSVPGTVLTVEYDPNRNARISLVQYE-----DGEKRYILHPRNLAVGAVIAAGPDAAIEVGNALPLSKIPLGTGVHNVEITPGRGGQMVRAAGAMAQVVA--KEGDMVTLKLPSGEVRLFRKECYATIGQIGNVDVNNISIGKAG---------RNRWKGRRPKVRGSVMNPVDHPHGGG 235
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CUPTR (50S ribosomal protein L2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 70/212 (33.02%), Postives = 106/212 (50.00%), Query Frame = 3 Query: 78 IRAQRKGAGSVFKSHTHHRKGPARFRSLDF--GERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG 707 I + KG G H HH +R +DF +++G + + + +DP R A +A V F ++ +A +GM GQ + G +A + GN LP+R+IP G + NVE G AR +G AV+++ + +++L SG + V CRA +G+V + + + KAG R P VRGV MNPV+HPHGGG Sbjct: 49 ITTRHKGGG-----HKHH------YRVVDFKRNDKDG-IPAKVERLEYDPNRSANIALVVFA-----DGERRYIIATKGMVAGQQLLNGSEAPIKAGNNLPIRNIPVGTTINNVEMLPGKGAQIARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATVGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGGG 236
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CLOBM (50S ribosomal protein L2 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 3 Query: 147 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734 ++R +DF + + I +DP R A +A V + +K +A G+ G V G ++ + VGN LP+R+IP G V+ N+E G R +G+ A +++ + D ++++LPSG + + CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYA-----DGEKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CLOBL (50S ribosomal protein L2 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 3 Query: 147 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734 ++R +DF + + I +DP R A +A V + +K +A G+ G V G ++ + VGN LP+R+IP G V+ N+E G R +G+ A +++ + D ++++LPSG + + CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 61 KYRIIDFKRNKDNIPAKVVSIEYDPNRTAFIALVVYA-----DGEKRYIIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAAGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTSEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_CLOBK (50S ribosomal protein L2 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20 Identity = 64/197 (32.49%), Postives = 97/197 (49.24%), Query Frame = 3 Query: 147 RFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 734 ++R +DF + + I +DP R A +A V + +K +A G+ G V G ++ + VGN LP+R+IP G V+ N+E G R +G+ A +++ + D ++++LPSG + + CRA IG V+ + KAG H P VRG MNP +HPHGGG IGH S Sbjct: 61 KYRVIDFKRNKDNISAKVVSIEYDPNRTAFIALVVYA-----DGEKRYMIAPVGLKVGDTVVSGPESDIKVGNCLPIRNIPVGTVIHNIELAPGKGAQLVRSAGNSAQLMA--KEGDYSQVRLPSGEVRYIRVECRATIGVVSNQTNEIVNIGKAGRKRH-----MGVRPTVRGSVMNPNDHPHGGGEGRSPIGHPS 245 The following BLAST results are available for this feature:
BLAST of FC923856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923856 ID=FC923856; Name=FC923856; organism=Citrus clementina; type=EST; length=756bpback to top |