FC923856

Overview
NameFC923856
Unique NameFC923856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.124e-43
Identity = 99/231 (42.86%), Postives = 137/231 (59.31%), Query Frame = 3
Query:   66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755
            MG+ +  QR G GS  F+S +  R G  R+ ++      G+L G + +I+H+PG   P+A +   +  ++  Q     A +G+   Q +  G+ + +  GNV+ +   PEG +VCNVE + GD G +AR +G YAVV+  +   D   IKLPS   K V +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+AP
Sbjct:    1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNTPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAP 219          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.124e-43
Identity = 100/231 (43.29%), Postives = 136/231 (58.87%), Query Frame = 3
Query:   66 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755
            MG+ +  QR G G + F+S +  R GPAR+ +++     G  KG I +I+H+PG  AP+ +V   +  ++        A +G+  GQ +  G+ AT+  GN++ +  +PEG V+CNVE   GD G FAR +G YAV+       +   IKL S     V    RA +G +AGGG  EKPLLKAGN Y K+RV+   WP VRGVAMN V HPHGGG HQ +   STV R+AP
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGPARYPNIE-----GDHKGKIIDILHNPGVTAPVVKVKLDNGLQFY-----IPAVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVI--SGKAGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAP 219          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.917e-43
Identity = 101/231 (43.72%), Postives = 135/231 (58.44%), Query Frame = 3
Query:   66 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755
            MG+ I  QR+G  GS F+S +  R+GP R+  L    R     G + +IIH PG  AP+A++   +   +     L  AAEG+Y GQ +  G  A+   GNV+ L   PEG +V NVE   GD G FAR  G YAVV+   P+ + T ++LPSG    V +  RA +G VAGGGR EKP++KAG  Y++ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + AP
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAGR-----GYVVDIIHVPGLNAPVAKIRLENGLEF-----LNYAAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGG--TPVSKTAP 219          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.504e-43
Identity = 84/186 (45.16%), Postives = 125/186 (67.20%), Query Frame = 3
Query:  189 KGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 746
            +G + +I+H+  RGAP+A ++F+          +  A+EGMYTGQ +  G  A + +GN+  ++++PEG  V +VE   GD G FA  +G Y++V++H  + + T IK+PSG K  V S CR ++G VAGGG  +KPLLKA  A++K + + + +P+VRGVAMNPVEH HGGGNHQH+G  +TV +
Sbjct:   34 EGEVIDIVHERSRGAPVAIISFKE------DDCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSK 213          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.514e-43
Identity = 98/231 (42.42%), Postives = 136/231 (58.87%), Query Frame = 3
Query:   66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755
            MG+ +  QR G GS  F++    R G  R+ ++      G+  G + +I+H+PG  AP+A V   +  ++     L  A +G+   Q +  G+ + +  GNV+ +   PEG +VCNVE + GD G +AR +G YAVV+  +   D   I+LPS   K V +  RA +G VAGGG  EKPLLKAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+AP
Sbjct:    1 MGKNLLQQRAGKGSPTFRNPGWLRIGKVRYPNIF-----GHFIGKVIDIVHNPGMNAPVALVKLENGTKF-----LMQAIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDRVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAP 219          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.623e-42
Identity = 93/232 (40.09%), Postives = 138/232 (59.48%), Query Frame = 3
Query:   66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755
            MG+ + +Q +G G+  +++ +H  K   R   +D    N  L+G +  I HDP R AP+A+V F      ++ +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CNVE    D G F R SG YA V++H      T + +PSG  K +   CRA++G VAG GR ++P LKAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+AP
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAF------ENGEELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTHEATR--TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAP 221          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.119e-42
Identity = 95/231 (41.13%), Postives = 134/231 (58.01%), Query Frame = 3
Query:   66 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755
            MG+ +  QR G G + F+S +  R G A+  +++     G   G + +I+H+PG  APLA +      ++        + +G+  GQ +  G+ A +  GN++ + ++PEG ++ N+E   GD G FAR +G Y VV+      D   +KL S     V S  RA++G VAGGG TEKPLLKAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +   STV R+AP
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLALIKLDDGTKFY-----VPSVQGLVVGQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAP 219          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.722e-42
Identity = 98/218 (44.95%), Postives = 133/218 (61.01%), Query Frame = 3
Query:   66 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGE-RNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNH 713
            MG+ +  QR+G  GSVF++    R GPAR+   +  E +N  L GV+ +++H+PGRGAPLA V F         K   +  EG+  GQ +Y G KA  V+G+++ + ++PEG +V N+E   GD G  AR SG YA+V++H+  N  T I+LPS   K V S  RA IG VA GGR EKP+LKAG  +H  R K   +P VRG AM+   HP GGG+H
Sbjct:    1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFE-----DGTKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHPAGGGHH 211          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.054e-42
Identity = 93/231 (40.26%), Postives = 131/231 (56.71%), Query Frame = 3
Query:   66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755
            M + I +Q +G GS  +++ +H  K   +   +D       L G +  I HDP R AP+A V F +      +K+  V  EG+  G+ + CG  A +  GN LPL  IPEG  +CN+E    D G +AR SG YA ++S   +     +++PSG  K     CRA IG VAGGGR ++P LKAG  YHK + +   +P+V G+AMN V+HP GGGN +H G  +TV R+AP
Sbjct:    1 MAKRIISQNRGRGSPTYRAPSHKYKAELKHPRVD---EESTLNGTVIGIEHDPARSAPIAMVAFENG-----KKQFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAP 221          
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.061e-41
Identity = 94/230 (40.87%), Postives = 126/230 (54.78%), Query Frame = 3
Query:   66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDA 752
            MG  I  Q +G G   +++ +H  K   +     FG     ++  + +I HDP R  P+A V      +   +KE  +  EG+  GQ +  G +AT+V GN LPL +IP G  VCN+E   GD G F R SG  AV+I  +       +++PSG  K     C A +G VAGGGR +KP+LKAG  YHK +     WP+VRGVAMN ++HP GGG HQH G   TV R A
Sbjct:    1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGA 222          
The following BLAST results are available for this feature:
BLAST of FC923856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SULIN1.124e-4342.8650S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULAC1.124e-4343.2950S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_THENV1.917e-4343.7250S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL8_ENCCU2.504e-4345.1660S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_SULSO9.514e-4342.4250S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_METAC1.623e-4240.0950S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_SULTO2.119e-4241.1350S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_THEPD4.722e-4244.9550S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RL2_METBU8.054e-4240.2650S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_METLZ3.061e-4140.8750S ribosomal protein L2P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionC31709F06EF StrClemenN Citrus clementina cDNA clone C31709F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923856 ID=FC923856; Name=FC923856; organism=Citrus clementina; type=EST; length=756bp
GGTCCCAGCCGCACTTGTCAAAAACCCCAAAACCCTAGACAGAGAGTCAC
AGCGAATCGACTCAAATGGGACGAGTCATTAGAGCACAGCGTAAGGGAGC
GGGCTCCGTCTTCAAGTCGCACACACACCACCGCAAGGGCCCGGCCAGGT
TCCGCTCGCTTGATTTCGGGGAACGCAACGGCTACCTGAAGGGAGTCATA
ACGGAGATCATCCATGATCCTGGCCGCGGCGCCCCGCTGGCCCGGGTCAC
GTTTCGTCATCCGTTTAGGTACCAGCACCAAAAGGAGCTGTTCGTGGCGG
CTGAAGGGATGTACACTGGGCAGTTCGTGTACTGCGGAAGGAAGGCGACT
TTGGTTGTCGGAAATGTGTTGCCCTTGCGATCGATCCCTGAAGGAGCGGT
GGTTTGTAATGTGGAGCATCACGTGGGTGATCGCGGTGTCTTTGCCAGAT
GTTCGGGTGATTATGCTGTTGTCATTAGTCATAATCCTGATAACGACACT
ACTAGGATTAAGCTCCCATCTGGTGCCAAGAAGATTGTGCCGAGTGGGTG
CCGTGCTATGATTGGTCAAGTTGCCGGTGGAGGCAGAACAGAGAAGCCAT
TGTTGAAGGCAGGAAATGCTTATCACAAGTTCAGGGTGAAGAGGAACTGC
TGGCCCAAGGTCCGTGGTGTTGCCATGAACCCTGTTGAGCATCCCCATGG
TGGTGGTAACCACCAGCACATTGGGCATGCAAGTACGGTTCGCCGTGATG
CACCCC
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