FC923856
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.124e-43 Identity = 99/231 (42.86%), Postives = 137/231 (59.31%), Query Frame = 3 Query: 66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755 MG+ + QR G GS F+S + R G R+ ++ G+L G + +I+H+PG P+A + + ++ Q A +G+ Q + G+ + + GNV+ + PEG +VCNVE + GD G +AR +G YAVV+ + D IKLPS K V + RA +G VAGGG EKPLLKAG Y K++VK WP VRGVAMN V+HPHGGG HQ + STV R+AP Sbjct: 1 MGKNLLQQRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNTPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAP 219
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.124e-43 Identity = 100/231 (43.29%), Postives = 136/231 (58.87%), Query Frame = 3 Query: 66 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755 MG+ + QR G G + F+S + R GPAR+ +++ G KG I +I+H+PG AP+ +V + ++ A +G+ GQ + G+ AT+ GN++ + +PEG V+CNVE GD G FAR +G YAV+ + IKL S V RA +G +AGGG EKPLLKAGN Y K+RV+ WP VRGVAMN V HPHGGG HQ + STV R+AP Sbjct: 1 MGKKLLQQRAGRGGINFRSPSWRRVGPARYPNIE-----GDHKGKIIDILHNPGVTAPVVKVKLDNGLQFY-----IPAVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVI--SGKAGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAP 219
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.917e-43 Identity = 101/231 (43.72%), Postives = 135/231 (58.44%), Query Frame = 3 Query: 66 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755 MG+ I QR+G GS F+S + R+GP R+ L R G + +IIH PG AP+A++ + + L AAEG+Y GQ + G A+ GNV+ L PEG +V NVE GD G FAR G YAVV+ P+ + T ++LPSG V + RA +G VAGGGR EKP++KAG Y++ R K +P VRG AM+P HPHGGG+HQ G + V + AP Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAGR-----GYVVDIIHVPGLNAPVAKIRLENGLEF-----LNYAAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGG--TPVSKTAP 219
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.504e-43 Identity = 84/186 (45.16%), Postives = 125/186 (67.20%), Query Frame = 3 Query: 189 KGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRR 746 +G + +I+H+ RGAP+A ++F+ + A+EGMYTGQ + G A + +GN+ ++++PEG V +VE GD G FA +G Y++V++H + + T IK+PSG K V S CR ++G VAGGG +KPLLKA A++K + + + +P+VRGVAMNPVEH HGGGNHQH+G +TV + Sbjct: 34 EGEVIDIVHERSRGAPVAIISFKE------DDCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSK 213
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 9.514e-43 Identity = 98/231 (42.42%), Postives = 136/231 (58.87%), Query Frame = 3 Query: 66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755 MG+ + QR G GS F++ R G R+ ++ G+ G + +I+H+PG AP+A V + ++ L A +G+ Q + G+ + + GNV+ + PEG +VCNVE + GD G +AR +G YAVV+ + D I+LPS K V + RA +G VAGGG EKPLLKAG Y K++VK WP VRGVAMN V+HPHGGG HQ + STV R+AP Sbjct: 1 MGKNLLQQRAGKGSPTFRNPGWLRIGKVRYPNIF-----GHFIGKVIDIVHNPGMNAPVALVKLENGTKF-----LMQAIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDRVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAP 219
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.623e-42 Identity = 93/232 (40.09%), Postives = 138/232 (59.48%), Query Frame = 3 Query: 66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFV-AAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755 MG+ + +Q +G G+ +++ +H K R +D N L+G + I HDP R AP+A+V F ++ +ELF+ A+EG+ G + CG A + GN++P+ ++PEG +CNVE D G F R SG YA V++H T + +PSG K + CRA++G VAG GR ++P LKAG YHK + + +P+V VAMNP +HP GGG +H G +TV R+AP Sbjct: 1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAF------ENGEELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTHEATR--TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAP 221
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 2.119e-42 Identity = 95/231 (41.13%), Postives = 134/231 (58.01%), Query Frame = 3 Query: 66 MGRVIRAQRKGAGSV-FKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755 MG+ + QR G G + F+S + R G A+ +++ G G + +I+H+PG APLA + ++ + +G+ GQ + G+ A + GN++ + ++PEG ++ N+E GD G FAR +G Y VV+ D +KL S V S RA++G VAGGG TEKPLLKAGN Y K++VK WP VRGVAMN V HPHGGG HQ + STV R+AP Sbjct: 1 MGKKLLQQRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLALIKLDDGTKFY-----VPSVQGLVVGQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAP 219
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 4.722e-42 Identity = 98/218 (44.95%), Postives = 133/218 (61.01%), Query Frame = 3 Query: 66 MGRVIRAQRKG-AGSVFKSHTHHRKGPARFRSLDFGE-RNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNH 713 MG+ + QR+G GSVF++ R GPAR+ + E +N L GV+ +++H+PGRGAPLA V F K + EG+ GQ +Y G KA V+G+++ + ++PEG +V N+E GD G AR SG YA+V++H+ N T I+LPS K V S RA IG VA GGR EKP+LKAG +H R K +P VRG AM+ HP GGG+H Sbjct: 1 MGKRLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFE-----DGTKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHPAGGGHH 211
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.054e-42 Identity = 93/231 (40.26%), Postives = 131/231 (56.71%), Query Frame = 3 Query: 66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAP 755 M + I +Q +G GS +++ +H K + +D L G + I HDP R AP+A V F + +K+ V EG+ G+ + CG A + GN LPL IPEG +CN+E D G +AR SG YA ++S + +++PSG K CRA IG VAGGGR ++P LKAG YHK + + +P+V G+AMN V+HP GGGN +H G +TV R+AP Sbjct: 1 MAKRIISQNRGRGSPTYRAPSHKYKAELKHPRVD---EESTLNGTVIGIEHDPARSAPIAMVAFENG-----KKQFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAP 221
BLAST of FC923856 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.061e-41 Identity = 94/230 (40.87%), Postives = 126/230 (54.78%), Query Frame = 3 Query: 66 MGRVIRAQRKGAGS-VFKSHTHHRKGPARFRSLDFGERNGYLKGVITEIIHDPGRGAPLARVTFRHPFRYQHQKELFVAAEGMYTGQFVYCGRKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARCSGDYAVVISHNPDNDTTRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDA 752 MG I Q +G G +++ +H K + FG ++ + +I HDP R P+A V + +KE + EG+ GQ + G +AT+V GN LPL +IP G VCN+E GD G F R SG AV+I + +++PSG K C A +G VAGGGR +KP+LKAG YHK + WP+VRGVAMN ++HP GGG HQH G TV R A Sbjct: 1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDHPFGGGGHQHPGKPKTVARGA 222 The following BLAST results are available for this feature:
BLAST of FC923856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923856 ID=FC923856; Name=FC923856; organism=Citrus clementina; type=EST; length=756bpback to top |