FC923862

Overview
NameFC923862
Unique NameFC923862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX4_KLULA (Sorting nexin-4 OS=Kluyveromyces lactis GN=SNX4 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 57/160 (35.62%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPAD-LMQIFKDVQSKVSDVVLGKEK 589
            LSV V+DP K     Q YI+Y+V TK +  +       V+RRY+DFV L   L   +  + +PPLP+K  +      RFS  F + R + L  F+ R+ SH EL +S  L+TFL + +  + R RS        + +D L+  FK V  +  + V  KEK
Sbjct:   17 LSVLVSDPQKQKTHSQTYITYQVSTKIDGKD---EPNCVVRRYNDFVLLHQILINDHPALLVPPLPDKKVLNYLSGDRFSHSFTQKRCRSLQTFMRRLLSHSELSKSRILETFLTSTDWDVYR-RSLTGQISTSEVSDVLINAFKHVNRQRDEFVEIKEK 172          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX3_ASPOR (Sorting nexin-3 OS=Aspergillus oryzae GN=snx3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  119 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 457
            +L + V +P   G     Y SY ++ +TN P ++    +V RRYSDF + RD L  +   + IPPLP K  V   RFS + IE RR+GL  F+  +A HP LQ  S+ L +F+Q
Sbjct:   22 FLEIEVRNPQTHGTSRNMYTSYEIVCRTNIPAFKLKHSVVRRRYSDFEYFRDILERESTRVTIPPLPGK--VFTNRFSDDVIEHRREGLQRFLQIVAGHPLLQTGSKVLASFIQ 133          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX3_ASPFU (Sorting nexin-3 OS=Aspergillus fumigatus GN=snx3 PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  119 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 457
            +L + V +P   G     Y SY ++ +TN P ++    +V RRYSDF + RD L  +   + IPPLP K  V   RFS + IE RR+GL  F+  +A HP LQ  S+ L +F+Q
Sbjct:   22 FLEIEVRNPQTHGTSRNMYTSYEIVCRTNIPAFKLKHSVVRRRYSDFEYFRDILERESTRVTIPPLPGK--VFTNRFSDDVIEHRREGLQRFLQIVAGHPLLQTGSKVLASFIQ 133          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX4_MAGGR (Sorting nexin-4 OS=Magnaporthe grisea GN=SNX4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.661e-14
Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L  +V+ P+K  +G + A++SY V T T F ++Q P+  V RR++DFV+L   L  +Y    +PPLP+K  +E     RF  +F   R   L  F+ R A HP L++S  L TFL++ +
Sbjct:   63 LECNVSSPLKENDGTKDAFVSYLVTTHTTFADFQKPDASVRRRFTDFVFLFKTLSREYPASAVPPLPDKQRMEYVRGDRFGNDFTSRRAYSLRRFLARCALHPVLRRSAILHTFLESPD 181          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX4_YEAST (Sorting nexin-4 OS=Saccharomyces cerevisiae GN=SNX4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 59/175 (33.71%), Postives = 87/175 (49.71%), Query Frame = 2
Query:  119 YLSVSVTDPVKLGN---GVQAYISYRVITKTN---FPEYQG-PEKIVI--RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 607
            +  + V+DP K          Y+SY++ TKTN   F + +G PE I++  RRYSD + L D L  ++    IPPLP+K   +     RFS  F + R   L  F+ R++ HP+L QS+  KTFL           S+D    +K   D +Q  KD   +V+D  +   K V + N
Sbjct:   27 WFEIIVSDPQKRTGDPGSSSGYVSYQISTKTNNTSFYDNRGDPESIIVVHRRYSDLLLLHDILLNRFPTCIIPPLPDKKVFQYIAGDRFSQRFTQKRCHSLQNFLRRVSLHPDLSQSKVFKTFLV----------SKDWESHRKVLQDSLQPNKD---EVTDAFMNAFKTVHKQN 188          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX4_ASPFU (Sorting nexin-4 OS=Aspergillus fumigatus GN=snx4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA-DEETMERLRSQDT 499
            L   V  P+K  +G + AYISY V T T+F  +Q P+  V RR++DF +L   L+ +Y    +PPLPEK  +E     RF  EF   R   L  F+ R+  HP L+++  L  FL++ D     RL S  T
Sbjct:   73 LECRVDSPLKENDGTKDAYISYLVTTHTDFKSFQKPDFAVRRRFTDFYFLYKTLYREYPACAVPPLPEKHKMEYVTGDRFGPEFTSRRAWSLHRFLKRLTLHPVLRRAPLLAIFLESPDWNAHMRLHSTRT 203          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX4_EMENI (Sorting nexin-4 OS=Emericella nidulans GN=snx4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 2
Query:  122 LSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 466
            L   V  P+K  +G + AYISY V T T+F  +Q  +  V RR++DFV+L   L+ +Y    +PPLP+K  +E     RF AEF   R   L  F+ R+  HP L+++  L  FL++ +
Sbjct:   71 LECRVDTPIKENDGTKDAYISYLVTTHTDFKSFQKADFTVRRRFTDFVFLYKTLYREYPACAVPPLPDKHKMEYVRGDRFGAEFTTRRAWSLHRFLKRLTLHPVLRRAPLLAIFLESPD 189          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX3_CANAL (Sorting nexin-3 OS=Candida albicans GN=SNX3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  119 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADE 466
            +L + V +P+  G G   +  Y ++ +TN P ++  E  + RRYSDFV  R  L ++   + IPPLP K  +   +F+   IE RRQGL+ F+  ++ HP LQ  S+ L  F+Q ++
Sbjct:   33 FLEIEVKNPLTHGYGSNLFTDYEIVCRTNIPAFKKRESRIQRRYSDFVAFRKILEQETTRVIIPPLPGKIFLNSNKFNDLNIEKRRQGLEKFLIVVSGHPLLQTGSKSLIEFIQNEK 149          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX3_GIBZE (Sorting nexin-3 OS=Gibberella zeae GN=SNX3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.076e-13
Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 2
Query:  119 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADEETMERLRSQD 496
            +L + V +P   G G   Y  Y ++ +TN P ++  +  V RRYSDF + RD L  +   + IPPLP K  V   RFS + IE RR GL+ F+  +  HP LQ  S+ L  F+Q   E + RLR  D
Sbjct:   19 FLEIEVRNPRTHGMGRHMYTDYEILCRTNIPAFKLRQSSVRRRYSDFEYFRDILERESARVTIPPLPGK--VFTNRFSDDVIEGRRAGLEKFLKIVVGHPLLQTGSKVLAAFVQG--EFVIRLRYHD 141          
BLAST of FC923862 vs. ExPASy Swiss-Prot
Match: SNX4_CANGA (Sorting nexin-4 OS=Candida glabrata GN=SNX4 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 56/174 (32.18%), Postives = 84/174 (48.28%), Query Frame = 2
Query:  122 LSVSVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEK-------IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 607
            L + V+DP K     G+  Y+SY++ T+T+ P Y G +K       +V RRY+D V L D L   +    IPPLP+K  ++     RF   F + R   L  F+ R++ HP L  S+ L+ FL  +E         DT  ++K  A  +Q     +  V+D V+   K V   N
Sbjct:   33 LEILVSDPQKRAGEAGLGPYVSYQISTRTDNPSYHGNQKASFDDIIVVHRRYNDVVLLHDILQNDHPTCIIPPLPDKKVLQYIAGDRFGRRFTQRRCHSLQNFLRRVSQHPILSTSKVLEIFLVGNE--------WDT--YRKNIAGTLQ--NAQKEDVTDAVMNAFKKVHNQN 194          
The following BLAST results are available for this feature:
BLAST of FC923862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX4_KLULA9.735e-1535.63Sorting nexin-4 OS=Kluyveromyces lactis GN=SNX4 PE... [more]
SNX3_ASPOR1.271e-1440.35Sorting nexin-3 OS=Aspergillus oryzae GN=snx3 PE=3... [more]
SNX3_ASPFU1.271e-1440.35Sorting nexin-3 OS=Aspergillus fumigatus GN=snx3 P... [more]
SNX4_MAGGR1.661e-1437.82Sorting nexin-4 OS=Magnaporthe grisea GN=SNX4 PE=3... [more]
SNX4_YEAST2.169e-1433.71Sorting nexin-4 OS=Saccharomyces cerevisiae GN=SNX... [more]
SNX4_ASPFU2.169e-1438.17Sorting nexin-4 OS=Aspergillus fumigatus GN=snx4 P... [more]
SNX4_EMENI3.699e-1437.82Sorting nexin-4 OS=Emericella nidulans GN=snx4 PE=... [more]
SNX3_CANAL6.310e-1435.90Sorting nexin-3 OS=Candida albicans GN=SNX3 PE=3 S... [more]
SNX3_GIBZE1.076e-1339.37Sorting nexin-3 OS=Gibberella zeae GN=SNX3 PE=3 SV... [more]
SNX4_CANGA1.836e-1332.18Sorting nexin-4 OS=Candida glabrata GN=SNX4 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC31709F12EF StrClemenN Citrus clementina cDNA clone C31709F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923862 ID=FC923862; Name=FC923862; organism=Citrus clementina; type=EST; length=610bp
GAATCCTTCTTCTTCCGTTCTTCGGTTCCATTCTCTAGTTCCCAATTAGA
TCATGATTAACACGCAGAGAAGCGCATCCGGATCGTCGCAGAGCCCTAGA
TCCCCGTCATCGCAGCCGTATTTATCGGTGTCAGTAACCGATCCCGTGAA
ATTAGGCAATGGAGTACAAGCTTACATTTCCTATCGAGTCATCACCAAGA
CAAATTTTCCTGAATATCAAGGCCCCGAGAAGATTGTTATTCGCCGTTAC
AGTGATTTTGTCTGGTTACGTGATCGACTTTTTGAGAAGTACAAGGGCAT
TTTCATTCCCCCTCTTCCTGAGAAGAGTGCCGTAGAGAAGTTTCGTTTCA
GTGCTGAATTTATTGAGATGAGACGCCAAGGATTGGATTTGTTTGTCAAT
CGGATTGCTTCACATCCTGAGCTGCAGCAAAGTGAGGATTTAAAAACATT
TTTGCAGGCAGACGAAGAGACAATGGAGAGATTAAGGTCTCAAGACACTG
GTTATTTCAAAAAGAAGCCAGCTGATTTGATGCAAATCTTCAAGGATGTA
CAATCTAAAGTGAGTGATGTNGTTCTTGGAAAAGAGAAGCCAGTTGAAGA
ATCTAATCCT
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