FC923895

Overview
NameFC923895
Unique NameFC923895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS ++IYGG +RNG  P HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS ++IYGG +RNG  P HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAA 141          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_AEQIR (40S ribosomal protein S19 OS=Aequipecten irradians GN=RPS19 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.387e-39
Identity = 67/134 (50.00%), Postives = 101/134 (75.37%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 502
            +VKDV  H F KA +A LK+SGKM++P W  I+K ++F EL+PYD DW+Y RAAS+ R +Y+R   GVG+ ++IYG  KRNG+ P H+C+SSG++AR +LQ L+   +++ +  GGR++TS GQ+DLD++A ++
Sbjct:    4 SVKDVDSHTFTKALAAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKDANGGRKLTSQGQKDLDRIAAQV 137          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 74/137 (54.01%), Postives = 101/137 (73.72%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W DIVK A+ KELAP D +W+Y+RAAS  R +YLR G+GVGS  +IYGG KRNG  P HF   S  +AR +LQ L+ + +++ +P GGRR+T  G RDLD++AG++  A
Sbjct:    7 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLTPQGTRDLDRIAGQVAAA 143          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 72/132 (54.55%), Postives = 99/132 (75.00%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 496
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A  KELAPYD +W+Y RAAS AR +YLR G GVGS ++IYGG +RNG  P HF + S ++AR +LQ L+ + +++ +  GGR++T  GQRDLD++AG
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAG 136          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19A_DROME (40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 72/135 (53.33%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 505
            TVKD+  H   KA +  LK++GK+++P   DIVKTA+FKELAPYDPDW+YVR AS+ R +Y R   GVGS ++IYGG KRNG  P HFC+++   AR  LQ L++  +++  P GGR+++S GQRDLD++A +IV
Sbjct:    5 TVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQIV 139          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 493
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++Q L+ + +++    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.850e-38
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 493
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++Q L+ + +++    GGRRI+  GQRDLD++A
Sbjct:    5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRIA 135          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_GILMI (40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 71/137 (51.82%), Postives = 102/137 (74.45%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W D+VK  + KELAP D +W+Y+RAAS  R +YLR G GVGS ++IYGG +RNG  P H+ + S  +AR +LQ L+ + +I+ +P GGRR+T+ G RDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVSAA 141          
BLAST of FC923895 vs. ExPASy Swiss-Prot
Match: RS19_PAGMA (40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 69/137 (50.36%), Postives = 100/137 (72.99%), Query Frame = 2
Query:  101 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFSRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 511
            TVKDV+  EFV+A +A LK+SGK+++P W D+VK  + KELAP D +W+Y+R+AS  R +YLR G GVGS ++IYG  +RNG  P H+   S  +AR +LQ L+ + +I+ +P GGRR+T+ G RDLD++AG++  A
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQALELLKMIEKDPNGGRRLTAQGTRDLDRIAGQVAAA 141          
The following BLAST results are available for this feature:
BLAST of FC923895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RS19_HUMAN8.839e-4053.2840S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN8.839e-4053.2840S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]
RS19_AEQIR4.387e-3950.0040S ribosomal protein S19 OS=Aequipecten irradians... [more]
RS19_ICTPU7.483e-3954.0140S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19_PIG1.276e-3854.5540S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19A_DROME1.667e-3853.3340S ribosomal protein S19a OS=Drosophila melanogas... [more]
RS19B_SCHPO2.844e-3854.9640S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19A_SCHPO4.850e-3854.9640S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19_GILMI8.273e-3851.8240S ribosomal protein S19 OS=Gillichthys mirabilis... [more]
RS19_PAGMA1.195e-3650.3640S ribosomal protein S19 OS=Pagrus major GN=rps19... [more]

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Properties
Property NameValue
Genbank descriptionC31710B02EF StrClemenN Citrus clementina cDNA clone C31710B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923895 ID=FC923895; Name=FC923895; organism=Citrus clementina; type=EST; length=712bp
GAAACCCTAGAGAGAGAGAGAGCGCAATTCCACCACCTTCTTGCAAAAGC
GAAGCTTTGAGTCGCTCTCCTGCTCTGTTGTGACCATGGCTACAGCTAGG
ACTGTCAAGGACGTGTCTCCTCATGAGTTCGTGAAGGCTTACTCTGCTCA
TCTCAAGCGATCTGGCAAGATGGAACTTCCCCCATGGACTGACATAGTCA
AGACTGCTCAGTTCAAGGAGCTTGCTCCCTACGACCCTGACTGGTACTAT
GTCAGAGCTGCCTCCATGGCAAGGAAAATCTACTTGAGGCAAGGGCTTGG
TGTGGGTTCTTTCAGTAGGATTTATGGTGGAAGTAAGAGGAATGGAAGCC
GTCCACCTCACTTCTGCAAAAGCAGTGGTGCTATTGCTCGCCACATTCTT
CAACAGTTGCAGAACATGAACATTATAGATATTGAGCCCAAGGGTGGAAG
GAGAATTACTTCCAGTGGCCAACGAGACCTTGACCAAGTTGCCGGAAGGA
TTGTCGTTGCTCCTTGAAGCTGCTCGACGGTGATCTTGTTTGATTTATTG
CAGGTTTTTGTTAGTTGATGGAATGATGTTGCATTCTTAAGTAAGTTTTG
ATTCCAAGTGTGGACTTTTTATGATGAACCCAGCTTCAGTTTTGTTGCTT
TTAGATGTTTGACATTTATCTGTAGTATTCACTATAAATTCTGCTATCGA
GAGGCTGTGTTT
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