FC923902

Overview
NameFC923902
Unique NameFC923902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  231 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 635
            A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V  K
Sbjct:    2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIKDRKVKAK 134          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  231 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 635
            A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V  K
Sbjct:    2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIKDRKVKAK 134          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  231 ASQQEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEE-LSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVVTK 635
            A+Q E    FKL+++GD G GK++ +    +  FE+    T+GV+            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD +  +V  K
Sbjct:    2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVDIKDRKVKAK 134          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNF--EELSPTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVD 608
            K++M+G   VGK+SL+  +  D F       TIG  F  K + VG + + L IWDTAG ER+  ++  YYRGA+  I+ YD+T   +F   +  W KE  L S  + C   L G K D
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFER-AKFWVKE--LRSLEEGCQIYLCGTKSD 123          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RHOH_MOUSE (Rho-related GTP-binding protein RhoH OS=Mus musculus GN=Rhoh PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFEEL-SPTI----GVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLV 593
            K +++GDS VGK+SLL+ FTS+ F E   PT+    GVD     V + G ++ L +WDTAG + FR++    Y+ A  ++M Y V   ++F NL + W  EI    +N  C  +LV
Sbjct:    6 KCVLVGDSAVGKTSLLVRFTSETFPEAYKPTVYENTGVD-----VFMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWISEI---RSNLPCTPVLV 113          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RHOC_CHICK (Rho-related GTP-binding protein RhoC OS=Gallus gallus GN=RHOC PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 42/121 (34.71%), Postives = 70/121 (57.85%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESE 620
            KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  ++V GK+++LA+WDTAGQE +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D  ++
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRND 124          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RHOB_RAT (Rho-related GTP-binding protein RhoB OS=Rattus norvegicus GN=Rhob PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 629
            KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D  S+  V
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRSDEHV 127          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RHOB_MOUSE (Rho-related GTP-binding protein RhoB OS=Mus musculus GN=Rhob PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 629
            KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D  S+  V
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRSDEHV 127          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RHOB_HUMAN (Rho-related GTP-binding protein RhoB OS=Homo sapiens GN=RHOB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 629
            KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D  S+  V
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRSDEHV 127          
BLAST of FC923902 vs. ExPASy Swiss-Prot
Match: RHOB_BOVIN (Rho-related GTP-binding protein RhoB OS=Bos taurus GN=RHOB PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  261 KLLMIGDSGVGKSSLLLSFTSDNFEELS-PTIGVDFKVKYVDVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDVWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 629
            KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ V  ++V GK+++LA+WDTAGQE +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D  S+  V
Sbjct:    7 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRSDEHV 127          
The following BLAST results are available for this feature:
BLAST of FC923902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_CHICK5.781e-1435.29GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA5.781e-1435.29GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN5.781e-1435.29GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAB24_MOUSE5.781e-1438.98Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
RHOH_MOUSE7.550e-1438.79Rho-related GTP-binding protein RhoH OS=Mus muscul... [more]
RHOC_CHICK7.550e-1434.71Rho-related GTP-binding protein RhoC OS=Gallus gal... [more]
RHOB_RAT7.550e-1436.29Rho-related GTP-binding protein RhoB OS=Rattus nor... [more]
RHOB_MOUSE7.550e-1436.29Rho-related GTP-binding protein RhoB OS=Mus muscul... [more]
RHOB_HUMAN7.550e-1436.29Rho-related GTP-binding protein RhoB OS=Homo sapie... [more]
RHOB_BOVIN7.550e-1436.29Rho-related GTP-binding protein RhoB OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC31710B11EF StrClemenN Citrus clementina cDNA clone C31710B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923902 ID=FC923902; Name=FC923902; organism=Citrus clementina; type=EST; length=675bp
ATAAACGAAACTAATAACAATTACAGCACTGCGACGACAACGATCGCGAT
CTCCATTTTCACCTTTTTCTGCGACCACAGTGAACAGATCCTACTTTTGC
CTATCGTCTTTGTAATTCATTCATCAAATTTCAGTGCTGTTGAGGTGGTG
GTGATTTTGGGGTTTGTGGGATTTGGATTTTGGTGGCAGTTTTTGAGAAA
GAGAGTCAAATTTAGATGGATTCATCATCAGCAAGTCAGCAAGAATTTGA
TTACTTGTTCAAGTTGTTGATGATTGGAGATTCTGGTGTTGGTAAAAGTA
GTCTCCTATTGAGCTTCACTTCTGACAACTTTGAAGAGCTTTCGCCCACT
ATTGGTGTCGATTTTAAGGTGAAATATGTTGATGTTGGGGGGAAGAAATT
GAAACTTGCAATTTGGGATACAGCTGGTCAGGAGAGATTTCGGACATTGA
CTAGTTCATACTACAGGGGTGCACAAGGCATCATTATGGTTTATGATGTT
ACAAGGCGAGACACATTTACTAATCTTTCTGATGTATGGGCTAAGGAAAT
TGACTTATACTCAACAAACCAAGATTGTATCAAATTGCTCGTTGGAAACA
AAGTTGATAAGGAAAGTGAAAGGGTTGTGACAAAGAAAGAGGGCATAAAC
TTTGCGAGGGAATATGGATGCCTTT
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