FC923905

Overview
NameFC923905
Unique NameFC923905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923905 vs. ExPASy Swiss-Prot
Match: CBR1_MACFA (Carbonyl reductase [NADPH] 1 OS=Macaca fascicularis GN=CBR1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   49 AVVTGANKGIGYEIVRQLASN-GVTTVLTARDEKRGLEAVEKLKQSGFDNVIFHQLDVADPAAIHSLANFIRSHFGKLDILVNNAGISGVCMDGN----DLSGVVKVNRSGTSGVILE 387
            A+VTG+NKGIG  IVR L        VLTARD  RG  AV++L+  G  +  FHQLD+ D  +I +L +F+   +G LD+LVNNAGI+    D           +K N  GT  V  E
Sbjct:    8 ALVTGSNKGIGLAIVRDLCRLFSGEVVLTARDVARGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRTLRDFLLKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTE 124          
BLAST of FC923905 vs. ExPASy Swiss-Prot
Match: DHK1_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   34 AATKHAVVTGANKGIGYEIVRQLASNGVTTVLTARDEKRGLEAVEKLKQSGFDNVIFHQLDVADPAAIHSLANFIRSHFGKLDILVNNAGISG 312
            AA   A+VTGA  GIG  I R+LA+ G  T L ARDE+R  + V++L+  GFD V     DVADPA I +        +G +DILVNNAG SG
Sbjct:   15 AAKPVALVTGATSGIGLAIARRLAALGARTFLCARDEERLAQTVKELRGEGFD-VDGTVCDVADPAQIRAYVAAAVQRYGTVDILVNNAGRSG 106          
BLAST of FC923905 vs. ExPASy Swiss-Prot
Match: CBR3_HUMAN (Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CBR3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   34 AATKHAVVTGANKGIGYEIVRQLASN-GVTTVLTARDEKRGLEAVEKLKQSGFDNVIFHQLDVADPAAIHSLANFIRSHFGKLDILVNNAGIS 309
            + ++ A+VTGAN+GIG  I R+L        VLTARD  RG  AV++L+  G  +  FHQLD+ D  +I +L +F+R  +G L++LVNNA ++
Sbjct:    3 SCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVA 94          
BLAST of FC923905 vs. ExPASy Swiss-Prot
Match: DHR13_BOVIN (Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.629e-12
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   25 MAEAATKHAVVTGANKGIGYEIVRQLASNGVTTVLTARDEKRGLEAVEKLKQ-SGFDNVIFHQLDVADPAAIHSLANFIRSHFGKLDILVNNAGISGVCMDGNDLSGVVKVNRSG 366
            +A    + AVVTGAN GIG     +LA  G   VL  R  +RG  A   L+Q SG + VIF  LD+A  A++ + A    S   +LDIL++NAGIS         + +++VN  G
Sbjct:   31 LASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFNLLLRVNHIG 145          

HSP 2 Score: 21.9422 bits (45), Expect = 3.629e-12
Identity = 12/33 (36.36%), Postives = 18/33 (54.55%), Query Frame = 3
Query:  477 LQTNFYGTKRMCEALIPFLQLSDSPRIVNVSSS 575
            L+ N  G   +   L+P L+ S   R+V VSS+
Sbjct:  139 LRVNHIGPFLLTHLLLPRLKTSAPSRVVVVSSA 171          
BLAST of FC923905 vs. ExPASy Swiss-Prot
Match: CBR1_RABIT (Carbonyl reductase [NADPH] 1 OS=Oryctolagus cuniculus GN=CBR1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   49 AVVTGANKGIGYEIVRQLASN-GVTTVLTARDEKRGLEAVEKLKQSGFDNVIFHQLDVADPAAIHSLANFIRSHFGKLDILVNNAGISGVCMDGN----DLSGVVKVNRSGTSGVILE 387
            A+VTGANKG+G+ I R L        +LTA+DE +G  AV++L+  G  +  FHQLD+ D  +I +L +F+R  +G L++LVNNA I+    D           +K N  GT  V  E
Sbjct:    8 ALVTGANKGVGFAITRALCRLFSGDVLLTAQDEAQGQAAVQQLQAEGL-SPRFHQLDITDLQSIRALRDFLRRAYGGLNVLVNNAVIAFKMEDTTPFHIQAEVTMKTNFDGTRDVCTE 124          
BLAST of FC923905 vs. ExPASy Swiss-Prot
Match: DHR13_HUMAN (Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   25 MAEAATKHAVVTGANKGIGYEIVRQLASNGVTTVLTARDEKRGLEAVEKLKQ-SGFDNVIFHQLDVADPAAIHSLANFIRSHFGKLDILVNNAGISGVCMDGNDLSGVVKVNRSG 366
            M     + AVVTGAN GIG     +LA  G   VL  R ++RG  A   L+Q SG + VIF  LD+A  A++ + A    S   +LDIL++NAGIS         + +++VN  G
Sbjct:   31 MGNLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSQERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREAFNLLLRVNHIG 145          
BLAST of FC923905 vs. ExPASy Swiss-Prot
Match: DHR13_MOUSE (Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   52 VVTGANKGIGYEIVRQLASNGVTTVLTARDEKRGLEAVEKLKQ-SGFDNVIFHQLDVADPAAIHSLANFIRSHFGKLDILVNNAGISGVCMDGNDLSGVVKVNRSG 366
            VVTGAN GIG     +LA  G   VL  R  +RG  A   L+Q SG + VIF  LD+A  A++ + A    S   +LD+L++NAGIS         + +++VN  G
Sbjct:   40 VVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGISSCGRTRETFNLLLRVNHVG 145          
The following BLAST results are available for this feature:
BLAST of FC923905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CBR1_MACFA2.542e-1343.22Carbonyl reductase [NADPH] 1 OS=Macaca fasciculari... [more]
DHK1_STRVN4.336e-1349.46Granaticin polyketide synthase putative ketoacyl r... [more]
CBR3_HUMAN7.397e-1344.09Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CB... [more]
DHR13_BOVIN3.629e-1239.13Dehydrogenase/reductase SDR family member 13 OS=Bo... [more]
CBR1_RABIT3.671e-1239.83Carbonyl reductase [NADPH] 1 OS=Oryctolagus cunicu... [more]
DHR13_HUMAN1.395e-1139.13Dehydrogenase/reductase SDR family member 13 OS=Ho... [more]
DHR13_MOUSE9.042e-1139.62Dehydrogenase/reductase SDR family member 13 OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionC31710C05EF StrClemenN Citrus clementina cDNA clone C31710C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923905 ID=FC923905; Name=FC923905; organism=Citrus clementina; type=EST; length=729bp
GGCACAACTTTATCATTCCATTCAATGGCAGAAGCAGCAACAAAGCATGC
AGTTGTTACAGGAGCAAATAAGGGAATTGGGTATGAAATAGTGAGGCAAT
TGGCTTCAAATGGGGTCACTACGGTACTAACAGCCAGAGATGAGAAGAGG
GGTCTTGAAGCTGTTGAAAAACTGAAACAGTCTGGCTTTGATAATGTGAT
CTTTCATCAGCTTGATGTTGCAGACCCTGCTGCTATTCACTCTCTAGCTA
ATTTCATTCGAAGTCATTTTGGAAAGCTTGATATTTTGGTGAACAATGCA
GGGATTAGTGGAGTCTGTATGGATGGTAATGATTTATCTGGTGTTGTCAA
GGTCAACCGTTCAGGGACTAGTGGAGTCATTTTGGAGGGTGACAATTTCT
CAGGTTTTGTCAAGGATGGTACGCCGGTCAAATGGTATGAATTGACAACT
CAAACTCATGAGTCAACTGAAAATGCCTTCAAACAAACTTCTATGGTACC
AAAAGAATGTGTGAAGCACTGATTCCCTTCCTCCAATTATCAGATTCACC
AAGAATTGTTAATGTTTCCTCTTCCTGGGGAAAGTTAGAGTATGTGACAA
ATGAATGGGCAAAAGGAGTGCTAAGCGATGTTGAGAACCTAACGGAAGAG
AGAGTGGATGAGGTGCTGAGGGAGTATTTGAATGATTTTAACTAGGTTCC
CCTTGAACCAANGCTGGGCCGTTCTATGT
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