FC923908

Overview
NameFC923908
Unique NameFC923908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD2_HORVU (Defender against cell death 2 OS=Hordeum vulgare GN=DAD2 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.506e-45
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 2
Query:   56 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TAL+QVVYM IVGSFPFNSFLS VLS +GTA+L VCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLNKAYAATPTNLKIIDLYVVFAVATALVQVVYMGIVGSFPFNSFLSGVLSSIGTAVLGVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_HORVU (Defender against cell death 1 OS=Hordeum vulgare GN=DAD1 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.244e-44
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 2
Query:   56 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TAL+QVVYM IVGSFPFNSFLS VLSC+GTA+LAVC RIQVNKDNKEFKDL PERAFADFVLC+LVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLNKAYAATPTNLKIIDLYVVFAVVTALLQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCHRIQVNKDNKEFKDLAPERAFADFVLCSLVLHLVIMNFLG 114          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_MAIZE (Defender against cell death 1 (Fragment) OS=Zea mays GN=DAD1 PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.070e-35
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 2
Query:  143 AVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            AV TALIQV YM +VGSFPFNSFLS VLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 AVATALIQVAYMGLVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 79          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_BOVIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Bos taurus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.913e-25
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 2
Query:   80 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            L    +ATP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLS  +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSATPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_RAT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Rattus norvegicus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2
Query:   80 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLS  +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_PIG (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Sus scrofa GN=DAD1 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2
Query:   80 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLS  +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_MOUSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mus musculus GN=Dad1 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2
Query:   80 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLS  +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_MESAU (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Mesocricetus auratus GN=DAD1 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2
Query:   80 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLS  +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_HUMAN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Homo sapiens GN=DAD1 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.095e-24
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 2
Query:   80 LRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            L    ++TP  LK++D Y+ + + T  +Q  Y  +VG+FPFNSFLS  +SCVG+ ILAVCLRIQ+N  NK +F+ + PERAFADF+  + +LHLV+MNF+G
Sbjct:   13 LEEYLSSTPQRLKLLDAYLLYILLTGALQFGYCLLVGTFPFNSFLSGFISCVGSFILAVCLRIQINPQNKADFQGISPERAFADFLFASTILHLVVMNFVG 113          
BLAST of FC923908 vs. ExPASy Swiss-Prot
Match: DAD1_DROME (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Drosophila melanogaster GN=CG13393 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.439e-24
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 2
Query:  101 TPTTLKIIDLYMGFAVFTALIQVVYMAIVGSFPFNSFLSEVLSCVGTAILAVCLRIQVNKDNKE-FKDLPPERAFADFVLCNLVLHLVIMNFLG 379
            TP  LK++D+Y+G+ + T +IQ VY  +VG+FPFNSFLS  +S V   +LAVCLR+Q N  NK  F  + PER FADF+  +++LHLV+MNF+G
Sbjct:   19 TPKKLKLVDIYLGYILLTGIIQFVYCCLVGTFPFNSFLSGFISTVSCFVLAVCLRLQANPQNKSVFAGISPERGFADFIFAHVILHLVVMNFIG 112          
The following BLAST results are available for this feature:
BLAST of FC923908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD2_HORVU2.506e-4584.26Defender against cell death 2 OS=Hordeum vulgare G... [more]
DAD1_HORVU1.244e-4483.33Defender against cell death 1 OS=Hordeum vulgare G... [more]
DAD1_MAIZE3.070e-3591.14Defender against cell death 1 (Fragment) OS=Zea ma... [more]
DAD1_BOVIN4.913e-2553.47Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_RAT1.095e-2452.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_PIG1.095e-2452.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MOUSE1.095e-2452.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_MESAU1.095e-2452.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_HUMAN1.095e-2452.48Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_DROME2.439e-2453.19Dolichyl-diphosphooligosaccharide--protein glycosy... [more]

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Properties
Property NameValue
Genbank descriptionC31710C09EF StrClemenN Citrus clementina cDNA clone C31710C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923908 ID=FC923908; Name=FC923908; organism=Citrus clementina; type=EST; length=555bp
GGAGAGAGAGAGAGAGAGAGATTACAGAGAGGAAATGGCGAGATCGACCG
GCAAAGACGCTCAAGCCCTTTTCCATTCCCTTCGCTCTGCTTATGCTGCC
ACTCCCACAACTCTTAAGATCATCGATCTGTATATGGGTTTCGCGGTTTT
TACTGCCTTAATTCAGGTAGTTTACATGGCTATTGTTGGATCCTTCCCAT
TCAACTCTTTTCTTTCGGAAGTACTTTCTTGTGTTGGGACGGCCATACTT
GCTGTTTGTCTACGTATTCAAGTGAACAAGGACAACAAGGAATTTAAGGA
CCTACCACCAGAGCGAGCTTTTGCGGACTTTGTTCTCTGCAATTTGGTGC
TGCATTTGGTGATCATGAATTTCCTTGGATAAACCTTGACCCTGGGTCAA
CTTAAAATACAATTTTCTTGGTCGATGACAGTGTGACCTAGCTGTAAAAG
TTAGTTACGACATTAATGCAGATATTTTTCATAGAATGTGAACTTACTAT
AAATGAAGACGTTGACCATTTTTGGATCAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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