FC923921

Overview
NameFC923921
Unique NameFC923921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 7.492e-102
Identity = 176/202 (87.13%), Postives = 190/202 (94.06%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRI+DVG KK+ VDEFPFCVHLVSWEKENVSSEALEA RIACNKYM KFAGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR +D++S HAQEALRRAKFKFPGR+KIIV+R WGFTK++R+DYL++K+E RIVPDGVN  LLGC
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGAKKRLVDEFPFCVHLVSWEKENVSSEALEAGRIACNKYMVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGC 202
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.669e-101
Identity = 175/197 (88.83%), Postives = 187/197 (94.92%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA 663
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVLLSVRCKD++ +HAQEALRRAKFKFPGRQKIIVSR WGFTKF+R++Y + ++ KRIVPDGVNA
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNA 197
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.726e-80
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+ WGFTKF+  ++    +EKR++PDG
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDG 194
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 4.726e-80
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+ WGFTKF+  ++    +EKR++PDG
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDG 194
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 297.36 bits (760), Expect = 4.726e-80
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+ WGFTKF+  ++    +EKR++PDG
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDG 194
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.172e-80
Identity = 140/196 (71.43%), Postives = 158/196 (80.61%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVN 660
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  V++FP CVHLVS E E +SSEALEA RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+ WGFTK+ R  Y   + + R+ PDG N
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCN 196
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 8.061e-80
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+ WGFTKF+  ++    +EKR++PDG
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDG 194
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 8.061e-80
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+ WGFTKF+  ++    +EKR++PDG
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDG 194
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.061e-80
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+ WGFTKF+  ++    +EKR++PDG
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDG 194
[Close]
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 8.061e-80
Identity = 142/194 (73.20%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+ WGFTKF+  ++    +EKR++PDG
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDG 194
The following BLAST results are available for this feature:
BLAST of FC923921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PINTA7.492e-10287.1360S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL103_ARATH1.669e-10188.8360S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL10_SHEEP4.726e-8073.2060S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG4.726e-8073.2060S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN4.726e-8073.2060S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10_DROME6.172e-8071.4360S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_RAT8.061e-8073.2060S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PONAB8.061e-8073.2060S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_PAPAN8.061e-8073.2060S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE8.061e-8073.2060S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]

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Properties
Property NameValue
Genbank descriptionC31710D12EF StrClemenN Citrus clementina cDNA clone C31710D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923921 ID=FC923921; Name=FC923921; organism=Citrus clementina; type=EST; length=680bp
AGCCATTTCTTTTTCTCTCCACTTTTCTTGGGTTTCTGGTTTAGTTGCTG
AATACCTACCAGGGCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATC
GCCAGATAAAAAATAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTG
CCTGATCCCAAGATCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGT
TGATGAATTCCCTTTCTGTGTGCACTTGGTGTCTTGGGAAAAGGAGAACG
TATCTAGTGAAGCTCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATG
GCCAAGTTTGCCGGGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCC
ATTCCATGTCTTGCGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATA
GGCTTCAAACTGGTATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGT
GCTAGAGTTGCCATTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAG
CAATAGTCTTCATGCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTC
CTGGTCGCCAAAAAATCATTGTCAGCAGATAGTGGGGTTTCACCAAGTTT
AGCCGCAGTGATTATTTGAGGTTCAAGTCAGAGAAACGTATTGTGCCCGA
TGGTGTTAATGCATAGCTTCTTGGATGTCA
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