FC923921

Overview
NameFC923921
Unique NameFC923921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.577e-75
Identity = 134/197 (68.02%), Postives = 159/197 (80.71%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA 663
            M RRPARCYR  KNKPYPKSR+ R VPD KIRI+D+G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+ WGF++++R +Y+  +S   I+PDG  A
Sbjct:    1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYA 197          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 5.978e-75
Identity = 133/197 (67.51%), Postives = 159/197 (80.71%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA 663
            M RRPARCYR  KNKPYPKSR+ R VPD KIRI+D+G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+ WGF++++R +Y+  +S   I+PDG  A
Sbjct:    1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYA 197          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.628e-72
Identity = 134/194 (69.07%), Postives = 151/194 (77.84%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            M RRPARCYR  KNKPYPKSR+ R VPD KIRIYD+G KK  VDEFP CVHLVS E E +SSEALEAARI  NKYM   +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+ WGFT   R +YL+ +    +  DG
Sbjct:    1 MARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDG 194          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.690e-67
Identity = 124/200 (62.00%), Postives = 147/200 (73.50%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LL 672
            MGRRPA+CYR  KNK YPKSR+CRGVP+ KIRIYD GM+K   D FP   HL+S E+E + SEALEAARI  NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y+++K E +   DGV+  +L
Sbjct:    1 MGRRPAKCYRYCKNKAYPKSRYCRGVPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKIL 200          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.381e-63
Identity = 123/194 (63.40%), Postives = 144/194 (74.23%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDG 654
            MGRRP RCYR +  K YPKSRF RGVPD KI+I+D+G +K GV EFP  V+ +S E+EN+S+EALEAARI  NKYM K AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS  +GFT     ++ +     RI+  G
Sbjct:    1 MGRRPGRCYRYLSKKAYPKSRFNRGVPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.094e-60
Identity = 114/131 (87.02%), Postives = 118/131 (90.08%), Query Frame = 1
Query:  286 CNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR*WGFTKFSRSDYLRFKSEKRIVPDGVNA*LLGC 678
            C    A  AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N+ HAQEALRRAKFKFP RQKIIVSR WGFTKFSR+DYL++KSE RIVPDGVNA LLGC
Sbjct:    1 CGGCEAGSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGC 131          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.439e-37
Identity = 82/169 (48.52%), Postives = 110/169 (65.09%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 579
            M  RPAR YR+ K   Y +  + +GVPDPKI+ +D+G       +F   V LV+ E+  V+  ALEAAR+A N+Y+ K  G+  +HL++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV  GQ +++VR    N  HA+EALRRA  KFP    I+V +
Sbjct:    1 MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.490e-33
Identity = 76/167 (45.51%), Postives = 103/167 (61.68%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 573
            M  RPARCY      PY +  +  GVP PKI  +++G ++  ++++     LV  E   +   ALEAARIA NKY+A   G   F+ R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +  + +EALRR   KFP   +I++
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIHGVPPPKITRFEMGNREM-MEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.261e-32
Identity = 74/166 (44.58%), Postives = 100/166 (60.24%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKII 570
            M  RPARCY      PY +  +  GVP PKI  +++G       ++ +   LV  E   +   ALEAAR+  NKY++   G   + L++RV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  G +++ VR +  +  HA+EALRRA  K P   +I+
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIPGVPQPKIVKFEMGNVH---GDYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
BLAST of FC923921 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32
Identity = 76/168 (45.24%), Postives = 99/168 (58.93%), Query Frame = 1
Query:   73 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 573
            M  RPARCYR+IK  PY +  +  G P  +I  +D+G         F     LV+ E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+  V  K  +  H +EALRRA  K P   +I+V
Sbjct:    1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKLPIPTRIVV 168          
The following BLAST results are available for this feature:
BLAST of FC923921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10B_SCHPO4.577e-7568.0260S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO5.978e-7567.5160S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_YEAST1.628e-7269.0760S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR2.690e-6762.0060S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU1.381e-6363.4060S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_TOBAC7.094e-6087.0260S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_METKA8.439e-3748.5250S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_AERPE1.490e-3345.5150S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_STAMF1.261e-3244.5850S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_PYRCJ6.258e-3245.2450S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionC31710D12EF StrClemenN Citrus clementina cDNA clone C31710D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923921 ID=FC923921; Name=FC923921; organism=Citrus clementina; type=EST; length=680bp
AGCCATTTCTTTTTCTCTCCACTTTTCTTGGGTTTCTGGTTTAGTTGCTG
AATACCTACCAGGGCTTTCGCCATGGGAAGAAGACCTGCTAGGTGTTATC
GCCAGATAAAAAATAAGCCGTATCCGAAATCACGCTTTTGTCGTGGTGTG
CCTGATCCCAAGATCAGGATCTATGATGTTGGAATGAAGAAGAAAGGGGT
TGATGAATTCCCTTTCTGTGTGCACTTGGTGTCTTGGGAAAAGGAGAACG
TATCTAGTGAAGCTCTTGAGGCTGCTCGAATTGCTTGCAACAAATATATG
GCCAAGTTTGCCGGGAAAGATGCTTTCCATTTGCGAGTCCGTGTTCACCC
ATTCCATGTCTTGCGTATCAACAAAATGCTTTCATGTGCTGGAGCTGATA
GGCTTCAAACTGGTATGAGGGGTGCTTTCGGTAAACCACAGGGCACTTGT
GCTAGAGTTGCCATTGGACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAG
CAATAGTCTTCATGCTCAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTC
CTGGTCGCCAAAAAATCATTGTCAGCAGATAGTGGGGTTTCACCAAGTTT
AGCCGCAGTGATTATTTGAGGTTCAAGTCAGAGAAACGTATTGTGCCCGA
TGGTGTTAATGCATAGCTTCTTGGATGTCA
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