FC923922

Overview
NameFC923922
Unique NameFC923922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.614e-35
Identity = 83/191 (43.46%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +GS +  KRE+AAF A  +HET               +C+ +E   S+ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  V FKTA+WFWMT      + H V+                 GFG     ING +ECG  Q ++V  RIG+YK YC+  GV  G NL C
Sbjct:   70 TGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 259          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.108e-35
Identity = 80/193 (41.45%), Postives = 104/193 (53.89%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     KREIAAFFA  +HET               +C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC   GV+PG NL C N
Sbjct:  114 TGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGN 305          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.753e-35
Identity = 80/193 (41.45%), Postives = 102/193 (52.85%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     K+E+AAF A  +HET               +C++ E N    YC    K +PC PGK YYGRGPIQLT N NYG AG+AI  D +  P+ ++ +P VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q  +V  R+G+YK YC  FGV PG NL C N
Sbjct:  125 TGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSP--KDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNN 315          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.132e-35
Identity = 80/193 (41.45%), Postives = 106/193 (54.92%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     KRE+AAFFA  +HET               +CY+ E      YC  Q+ Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG + L  P+ VA + VVSFK+A+WFWMT      + H V+                 G+G     ING +ECG    A+VQ RIG+Y+ YC+  GV+PG N+ C N
Sbjct:  130 TGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYC-VQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGN 321          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34
Identity = 79/193 (40.93%), Postives = 103/193 (53.37%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     KREIAAF A  +HET               +C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT      + H V+                 GFG     ING +ECG    ++VQ RIG+Y+ YC   GV+PG NL C N
Sbjct:  114 TGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGN 305          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.046e-34
Identity = 79/194 (40.72%), Postives = 105/194 (54.12%), Query Frame = 1
Query:    7 GSGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            G+G+ E  KRE+AAF    +HET               +C+ +E N  + YC + + ++PC PG+ YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     +NG +ECG     +V  RIG+Y+ YC  FG+  G NL C N
Sbjct:  133 GTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYC-QPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYN 325          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.366e-34
Identity = 79/193 (40.93%), Postives = 104/193 (53.89%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     K+E+AAFF   +HET               +C+ +E N ++ YC E +  +PC  GK YYGRGP+QL+ N NYG  G+AIG D L  P+ VA D V++FK A+WFWMT      + H V+                 G+G     ING +ECG  Q  +V  RIG+Y+ YCN FGV PG NL C N
Sbjct:  131 TGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYC-EPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYN 322          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 80/194 (41.24%), Postives = 103/194 (53.09%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH--------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     KREIAAF A  +HET                +CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT      + H V+                 G+G     ING +ECG    AQV+ RIG+YK YC+  GV+ G NL C N
Sbjct:   97 TGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYN 289          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.043e-34
Identity = 80/194 (41.24%), Postives = 103/194 (53.09%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH--------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     KREIAAF A  +HET                +CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT      + H V+                 G+G     ING +ECG    AQV+ RIG+YK YC+  GV+ G NL C N
Sbjct:  119 TGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYN 311          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.780e-34
Identity = 81/194 (41.75%), Postives = 104/194 (53.61%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH--------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     KRE+AAF A  +HET                +CY  E+N ++ YC + +  YPC PGK Y+GRGP+QLT N NYG  G+AIG D L  P+ +A DP +SFK+A WFWMT      + H V+                 GFG     ING +ECG    A+V+ RIG+YK YC+  GV  G NL C N
Sbjct:  117 TGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YC-QWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYN 308          
The following BLAST results are available for this feature:
BLAST of FC923922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_HORVU1.614e-3543.4626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_SOLTU2.108e-3541.45Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIX_PEA2.753e-3541.45Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI3_TOBAC6.132e-3541.45Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI3_SOLTU1.046e-3440.93Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ1.046e-3440.72Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_ARATH1.366e-3440.93Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_GOSHI2.330e-3441.24Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI3.043e-3441.24Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_THECC6.780e-3441.75Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC31710E01EF StrClemenN Citrus clementina cDNA clone C31710E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923922 ID=FC923922; Name=FC923922; organism=Citrus clementina; type=EST; length=596bp
CAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAGCGTGAGATTGCTGCATT
TTTTGCACACGTCACTCATGAAACTGGACATTTCTGCTACATAGAAGAGA
TTAACAAGTCCAACAGGTACTGTGATGAACAAAACAAACAGTACCCATGT
GTTCCCGGAAAGTTCTACTACGGCCGTGGACCGATCCAACTCACCGGAAA
TGGCAACTACGGAGCTGCCGGAAAAGCCATCGGGTTTGACGGATTAAGAG
CTCCCGAAACGGTGGCCAAGGACCCCGTTGTGTCATTTAAGACTGCCGTG
TGGTTTTGGATGACCAATGTGCACCCAGTTGTGAACCAAGGTTTTGGTGC
AACAATTCAGAGAATCAATGGTGCCGTTGAATGCGGTGGCAAGCAACCTG
CTCAGGTTCAAGCTCGCATTGGATATTATAAGGATTATTGCAACAAATTT
GGTGTTGCTCCTGGCCCAAATCTCTCTTGTTAAAATGTTTTCGCCGATAC
TTCACTGGCTTGTTGAAATAATGTGGTGTAATTTTATAATATAGGGCGGT
TTCATGTACCTAAAACAAAATAAATTGAAGAAATAAAAGGGTGTTG
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