FC923922

Overview
NameFC923922
Unique NameFC923922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.757e-30
Identity = 75/190 (39.47%), Postives = 94/190 (49.47%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHET------------GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +G     K+EIAAFF   +HET            G +C++ E N+                G  +YGRGPIQLTG  NY  AG+AIG D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q  QV+ RIG+Y+ YC    VAPG NL C
Sbjct:   64 TGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM---------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.757e-30
Identity = 73/185 (39.46%), Postives = 97/185 (52.43%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT-------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +G  +  KRE+AAF A  +H T        +CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTA+W WMT       + H VV                 G+G T   + G ++C G        R+ +YK YC+  GV  GPNL C
Sbjct:  142 TGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.757e-30
Identity = 73/185 (39.46%), Postives = 97/185 (52.43%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT-------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +G  +  KRE+AAF A  +H T        +CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTA+W WMT       + H VV                 G+G T   + G ++C G        R+ +YK YC+  GV  GPNL C
Sbjct:  142 TGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.257e-29
Identity = 77/192 (40.10%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWM------TNVHPVVN---------------QGFGATIQRINGAVECG-GKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +G   + KREIAAF    +HET               +CY++EIN    YCD  +  Y CV GK Y GRGPIQL+ N NYG  G  +    L+ PE V  DPV+SFKTA+WFWM       + H V+                 G+G     ING +ECG G   A  + RIG+YK YC+  G   G NL C
Sbjct:  134 TGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSN-YQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.567e-29
Identity = 79/192 (41.15%), Postives = 97/192 (50.52%), Query Frame = 1
Query:   13 GSPEVSKREIAAFFAHVTHETGH------------FCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECG-GKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            GS E+ +RE+AAFF   +HET              +C+ EEINK+                  YYGRGPIQLTG  NY AAG A+G D +  P+ V+ D VVSFKTA+WFWMT      + H V+                 G+G     ING +ECG G+  A V  RIGYYK YC+  G   G NL C N
Sbjct:   79 GSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKAT--------------SPPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVD-RIGYYKRYCDMLGAGYGSNLDCYN 255          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.911e-28
Identity = 76/192 (39.58%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHET------------GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     K+EIAAFF   +HET            G +C++ E N+                G  YYGRGPIQLTG  NY  AGKAI  D +  P+ VA D  VSFKTA+WFWMT      + H V+                 G+G     ING +ECG  Q A+V+ RIGYY+   +   VAPG NL C N
Sbjct:   71 TGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQM---------------GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYN 247          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-27
Identity = 73/191 (38.22%), Postives = 92/191 (48.17%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHET-----------GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            SG     ++EIAAFF   +HET           G +C++ + ++S+RY                YGRGPIQLT   NY  AG AI  D +  P+ VA D  +SFKTA+WFWMT      + H V+                 G G     ING +ECG    A V+ RIGYY+ YC    VAPG NL C N
Sbjct:   72 SGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYN 246          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.112e-27
Identity = 71/191 (37.17%), Postives = 94/191 (49.21%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHET-----------GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     ++EIAAFF   +HET           G +C++ + ++S+RY                YGRGPIQLT   NY  AG AIG + +  P+ VA D  +SFKTA+WFWMT      + H V+                 G+G     ING +ECG  +   V+ RIGYY+ YC    VAPG NL C N
Sbjct:   72 TGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYN 246          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.706e-27
Identity = 76/204 (37.25%), Postives = 96/204 (47.06%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGH-------------FCYIEEINKSNRYCDEQNKQ-YPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT-------NVHPVV---------------NQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N--VFADTSL 507
            +G  +  KRE+AAFFA  + ET               +C + E+N ++ YCD + K  YPCV    YYGRGP+QL  N NYG  G  +G + L  PE VA DPV+SF+ A+WFWM        + H V+                 GFG     I    EC      + Q RI YY  YC+   V PG NL C N   F D  L
Sbjct:  108 TGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDNGL 309          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 74/184 (40.22%), Postives = 98/184 (53.26%), Query Frame = 1
Query:    1 QFGS-GSPEVSKREIAAFFAHVTHET-GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHP-------VVNQ--------------GFGATIQRINGAVECG-GKQPAQVQARIGYYKDYCNKFGVAPGPNLSC 480
            +FG+ G+ E  +RE+AAFF   +HET G +    +   +  YC   N+  P  P   YYGRGPIQLT   NY  AG A+G D +  P+ V+ DPVV+F+TA+WFWMT   P       + NQ              G+G     ING  ECG G      + R+GYYK YC+ F V  G N++C
Sbjct:   67 RFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYC-RVNEITPSDPP--YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
The following BLAST results are available for this feature:
BLAST of FC923922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_SOLLC7.757e-3039.47Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI7_ORYSJ7.757e-3039.46Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI7.757e-3039.46Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI6_POPTR2.257e-2940.10Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI8_ORYSJ6.567e-2941.15Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY1.911e-2839.58Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC1.617e-2738.22Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC2.112e-2737.17Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR4.706e-2737.25Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI11_ORYSJ1.788e-2640.22Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC31710E01EF StrClemenN Citrus clementina cDNA clone C31710E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923922 ID=FC923922; Name=FC923922; organism=Citrus clementina; type=EST; length=596bp
CAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAGCGTGAGATTGCTGCATT
TTTTGCACACGTCACTCATGAAACTGGACATTTCTGCTACATAGAAGAGA
TTAACAAGTCCAACAGGTACTGTGATGAACAAAACAAACAGTACCCATGT
GTTCCCGGAAAGTTCTACTACGGCCGTGGACCGATCCAACTCACCGGAAA
TGGCAACTACGGAGCTGCCGGAAAAGCCATCGGGTTTGACGGATTAAGAG
CTCCCGAAACGGTGGCCAAGGACCCCGTTGTGTCATTTAAGACTGCCGTG
TGGTTTTGGATGACCAATGTGCACCCAGTTGTGAACCAAGGTTTTGGTGC
AACAATTCAGAGAATCAATGGTGCCGTTGAATGCGGTGGCAAGCAACCTG
CTCAGGTTCAAGCTCGCATTGGATATTATAAGGATTATTGCAACAAATTT
GGTGTTGCTCCTGGCCCAAATCTCTCTTGTTAAAATGTTTTCGCCGATAC
TTCACTGGCTTGTTGAAATAATGTGGTGTAATTTTATAATATAGGGCGGT
TTCATGTACCTAAAACAAAATAAATTGAAGAAATAAAAGGGTGTTG
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