FC923922

Overview
NameFC923922
Unique NameFC923922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 69/191 (36.13%), Postives = 94/191 (49.21%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHET---------GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     K+EIAAFF   +HET         G +C++ +I++S+RY                YGRGPIQLT   NY  AG+ IG   D +  P+ VA DP++SF+TA+WFWMT      + H V+                 G+G     ING +EC       V++RIG+Y+ YC    V  G NL C N
Sbjct:   72 TGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNN 246          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 69/191 (36.13%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHET---------GHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNLSC*N 486
            +G     K+EIAAFF   +HET         G +C++++I +S+RY                YGRGPIQLT   NY  AG+ IG   + +  P+ VA DP++SFKTA+WFWMT      + H V+                 G+G     ING  ECG       ++RIG+Y+ YC    V  G NL C N
Sbjct:   72 AGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNN 246          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.674e-24
Identity = 68/172 (39.53%), Postives = 87/172 (50.58%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVN---------------QGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAP 462
            +GS +V KRE+AAF A  +HET           +  +    +  Y       Y+GRGPIQ++ N NYGAAGKAIG D LR P+ V  D  V FKTA+WFWMT      + H V+                 G+G     I+G VECG  Q + V  RIGYYKD  + +   P
Sbjct:   38 TGSTDVRKREVAAFLAQTSHET-----------TGGWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKDNLDCYNQKP 198          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 61/141 (43.26%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   52 FAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMTNVHPVVNQGFGATIQRINGAVECGGKQPAQVQARIGYYKDYCNKFGVAPGPNL 474
            FAHVTHETG+          N YCD    Q PC  GK YYGRGPIQ++ N NYG AG+AIG DGL  P+ VA+D +  +KTA+ F                   +NG     G   A     + YY+ YC + GV PGPNL
Sbjct:   24 FAHVTHETGN----------NAYCDPSKTQKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF------------------LVNGEEAVPGLSAANA---VSYYRQYCQQLGVDPGPNL 133          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.567e-22
Identity = 69/184 (37.50%), Postives = 94/184 (51.09%), Query Frame = 1
Query:    4 FGS-GSPEVSKREIAAFFAHVTHETGH------------FCYIEEINKS-NRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVNQGFGATIQRINGAV-------ECGGKQPAQVQARIGYYKDYCNKFGVAPGPNL 474
            FG+ G     KRE+AAF AH++  T               C+I     + N +C   +  +PC  GK Y  RGPIQLT N NYG AG+AIG D ++ P+ V KDP++SFKTA+WFWM+      + H +V     A  +  N  V         G    A   + IG+YK YC+  GV+ G +L
Sbjct:  170 FGTIGDVATRKREVAAFLAHISQATSGERSDVENPHAWGLCHINTTTVTENDFCTSSD--WPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLNANSAANRIPNKGVIGNIISRAFGHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of FC923922 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 59/179 (32.96%), Postives = 77/179 (43.02%), Query Frame = 1
Query:   10 SGSPEVSKREIAAFFAHVTHETGHFCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTAVWFWMT------NVHPVVNQ---------------GFGATIQRINGAVECGGKQPAQV-QARIGYYKDYCNKFGVAPGPNLSC 480
            +G   + KREIAAF    +HET                   N  +P   G   Y  G   +  N NYG  G  +    L+ PE V  DP ++FKTA+WFWMT      + H V+ +               G+G     ING +ECG   P    + RIG+YK YC+  G   G NL C
Sbjct:  130 TGDDLMRKREIAAFLGQTSHET-------------------NGWWPAAQGD-QYDWGYCHM--NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDC 286          
The following BLAST results are available for this feature:
BLAST of FC923922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLCI5.203e-2636.13Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC8.875e-2636.13Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_AVESA1.674e-2439.53Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
IAMY_COILA3.729e-2443.26Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]
AGI_URTDI1.567e-2237.50Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIB_POPTR4.415e-1732.96Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31710E01EF StrClemenN Citrus clementina cDNA clone C31710E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923922 ID=FC923922; Name=FC923922; organism=Citrus clementina; type=EST; length=596bp
CAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAGCGTGAGATTGCTGCATT
TTTTGCACACGTCACTCATGAAACTGGACATTTCTGCTACATAGAAGAGA
TTAACAAGTCCAACAGGTACTGTGATGAACAAAACAAACAGTACCCATGT
GTTCCCGGAAAGTTCTACTACGGCCGTGGACCGATCCAACTCACCGGAAA
TGGCAACTACGGAGCTGCCGGAAAAGCCATCGGGTTTGACGGATTAAGAG
CTCCCGAAACGGTGGCCAAGGACCCCGTTGTGTCATTTAAGACTGCCGTG
TGGTTTTGGATGACCAATGTGCACCCAGTTGTGAACCAAGGTTTTGGTGC
AACAATTCAGAGAATCAATGGTGCCGTTGAATGCGGTGGCAAGCAACCTG
CTCAGGTTCAAGCTCGCATTGGATATTATAAGGATTATTGCAACAAATTT
GGTGTTGCTCCTGGCCCAAATCTCTCTTGTTAAAATGTTTTCGCCGATAC
TTCACTGGCTTGTTGAAATAATGTGGTGTAATTTTATAATATAGGGCGGT
TTCATGTACCTAAAACAAAATAAATTGAAGAAATAAAAGGGTGTTG
back to top