FC924872
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALSA (30S ribosomal protein S17P OS=Halobacterium salinarium GN=rps17p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19 Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS 505 +IGL P EGT D+ CPF G +S+RG++L G S M +T++V R Y FV KY RY KR S +PAH CF + GD V I + RPLSKT V+++ G + Sbjct: 2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGGDA 109
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALS3 (30S ribosomal protein S17P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps17p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19 Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS 505 +IGL P EGT D+ CPF G +S+RG++L G S M +T++V R Y FV KY RY KR S +PAH CF + GD V I + RPLSKT V+++ G + Sbjct: 2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGGDA 109
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRHO (30S ribosomal protein S17P OS=Pyrococcus horikoshii GN=rps17p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19 Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y H++KKY+RYE R S I AH PC K GD V+I + RPLSKT F V+ V+ Sbjct: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVISDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRAB (30S ribosomal protein S17P OS=Pyrococcus abyssi GN=rps17p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19 Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y H++KKY+RYE R S I AH PC K GD V+I + RPLSKT F V+ V+ Sbjct: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METBU (30S ribosomal protein S17P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps17p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19 Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484 K IGL P + + D CPF G + +RG+I GT SAKM+RT+++++ + KYQRYEKR S I AH PC K GD V I +CRPLSKT + V+K Sbjct: 3 KDIGLDIPEPTKECD----DINCPFHGELPVRGQIHVGTVVSAKMDRTVVIQQRREKLINKYQRYEKRQSKIHAHNPPCIDAKVGDIVTIAECRPLSKTKSYVVVK 104
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_SULSO (30S ribosomal protein S17P OS=Sulfolobus solfataricus GN=rps17p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 2 Query: 224 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL 481 D+ CP+ G++ +RG L G + + ++ R YL++ KY+RYE+R S I AH+ PC V+EGD VIIG+CRPLSK++ F VL Sbjct: 25 DEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVL 110
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METTH (30S ribosomal protein S17P OS=Methanobacterium thermoautotrophicum GN=rps17p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18 Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 2 Query: 224 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487 D CPF G + +RG+IL GT S K RT+ V R++ F++KY+RYEKR S I AH C V+ GD V I +CRPLSKT F V++V Sbjct: 15 DPNCPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRKYERYEKRKSKIKAHKPDCIDVRVGDTVKIAECRPLSKTKNFVVVEV 102
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METST (30S ribosomal protein S17P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps17p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18 Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 2 Query: 173 IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487 +G+ K P + D CPF G +S+RG+++ GT S K +RTI V R++ ++ K++RYEKR+S I AH C VK GD V I +CR LSKT F +++V Sbjct: 2 VGINVKQPEKECH----DPNCPFHGELSVRGQVIEGTVTSDKADRTITVERSFYKYINKFERYEKRNSKIKAHKPDCLDVKVGDSVKIAECRQLSKTKHFVLVEV 102
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_AERPE (30S ribosomal protein S17P OS=Aeropyrum pernix GN=rps17p PE=3 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18 Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2 Query: 224 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487 D CP+ GT+ +RG +L G A+ R ++V+ YL++ KKY RYE+R I AH+ C VKEGD V+IG+ P+SKTV+F VL V Sbjct: 24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYLYYDKKYNRYERRSKKIHAHLPDCISVKEGDVVVIGETMPISKTVKFTVLGV 111
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_SULAC (30S ribosomal protein S17P OS=Sulfolobus acidocaldarius GN=rps17p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18 Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 2 Query: 167 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487 K++G+ G P + + Y CP+ G++ +RG +L G A+ NRT V R Y+ + KY+RYE+R S I HI C VKEGD+VIIG+ RP++K++ F +L V Sbjct: 9 KNVGIEGVSAPSKTCDDEY----CPYHGSLKVRGIVLEGKLIRARANRTGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIAKSISFVILGV 112 The following BLAST results are available for this feature:
BLAST of FC924872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >FC924872 ID=FC924872; Name=FC924872; organism=Citrus clementina; type=EST; length=624bpback to top |