FC924872
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_SULTO (30S ribosomal protein S17P OS=Sulfolobus tokodaii GN=rps17p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18 Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 2 Query: 167 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL 481 K+IG+ G P + + D CPF G + +RG IL G + +T +V R+YL + KY+RYE+R S I HI PC VKEGD+VII +CRP++K+V F V+ Sbjct: 12 KNIGIEGVNPPSKTCD----DINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVI 113
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METVA (30S ribosomal protein S17P OS=Methanococcus vannielii GN=rps17p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18 Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 2 Query: 170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484 +IG+ K P E D CPF GT+S+RG+I G K + TI+++R ++ KY+RYEKR +++ AH PC K GD V + +CRP+SKT F V++ Sbjct: 3 NIGIDVKAPENVCE----DVNCPFHGTLSVRGQIFEGVVSGDKGHNTIVIKREVTGYISKYERYEKRTTSLVAHNPPCINAKTGDVVKVMECRPVSKTKSFVVIE 103
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PICTO (30S ribosomal protein S17P OS=Picrophilus torridus GN=rps17p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.674e-18 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 ++IG+ K P E T D KCPF G + I G+I+ GT S KMN +I+++R +KKY+RYE + S AH+ C V+ GD V I +CR L+KT+ F V++ + Sbjct: 2 ENIGIDVKKP----ERTCNDPKCPFHGNLRIHGQIIVGTVVSTKMNGSIVLKRESRRLIKKYERYETKISKFHAHLPGCIDVRPGDRVKIAECRKLAKTISFVVVEKV 105
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRFU (30S ribosomal protein S17P OS=Pyrococcus furiosus GN=rps17p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.263e-17 Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y ++ KY+RYE R S I AH PC K GD V+I + RPLSKT F V+ V+ Sbjct: 3 RDIGLRVQPPAEKCD----DPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVL 106
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METMP (30S ribosomal protein S17P OS=Methanococcus maripaludis GN=rps17p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17 Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 2 Query: 170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484 +IG+ K P E D CPF GT+S+RG+I G S K + TI+++R ++ KY+RYEKR +++ AH C + K GD V + +CRP+SKT F V++ Sbjct: 3 NIGIDVKAPENVCE----DPNCPFHGTLSVRGQIFEGIVTSDKGHDTIVIKREVTGYISKYERYEKRTTSLVAHNPACIKAKVGDTVKVMECRPISKTKSFVVIE 103
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALWD (30S ribosomal protein S17P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps17p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17 Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 2 Query: 170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS 505 +IGL P E + D CPF G++S+RG+ L GT S M++T+IV R Y V KY R KR S IPAH PC + EGD V I + RPLSKT V++ I G + Sbjct: 2 AIGLNVTEP----EVSCADTNCPFHGSLSVRGQTLEGTVASTDMDKTVIVEREYDVRVPKYDRLMKRRSRIPAHAPPCVDLAEGDTVRIAETRPLSKTKSHVVVEQIDTGGA 109
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_HALMA (30S ribosomal protein S17P OS=Haloarcula marismortui GN=rps17p PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 3.676e-17 Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 2 Query: 170 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGA 514 ++GL + P E T D+ CPF G +S+RG+ L G S M +T++V R Y V KY R+ KR S +PAH C + GD V I +CRPLSKT V+ V+ G A Sbjct: 2 ALGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVPKYDRFMKRRSRVPAHAPDCLDLAVGDTVTIAECRPLSKTKSHVVVGVVADEQDGDA 112
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRKO (30S ribosomal protein S17P OS=Pyrococcus kodakaraensis GN=rps17p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17 Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 + IGL + P E D KCP+ G + I GR + G S K +T++V R Y H++KKY+RYE R S + AH C K GD V+I + RP+SKT + V+ V+ Sbjct: 2 REIGLRVQPPAEVCN----DPKCPWHGNLKIHGRYVEGIVVSDKGKKTVVVERQYYHYLKKYERYELRKSKVHAHNPECINAKVGDKVLIAETRPISKTKSWVVVAVL 105
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_METJA (30S ribosomal protein S17P OS=Methanocaldococcus jannaschii GN=rps17p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.801e-17 Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484 ++IG+ K P + DK CPF G + +RG+ G S K ++T+I++R + ++KKY+RYE+R + + AH PC + GD V + +CRP+SKT F V++ Sbjct: 4 RNIGIQVKAPEVECD----DKNCPFHGNLPVRGQSFVGVVVSDKPHKTVIIKREVVKYIKKYERYERRTTKLAAHNPPCIHARVGDIVRVMECRPISKTKAFVVVE 105
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_ARCFU (30S ribosomal protein S17P OS=Archaeoglobus fulgidus GN=rps17p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17 Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 + IG+ K P E D+ CPF GT+S+RG++L G +T ++ R + +V K++RY K+ S + AH C R + GD V IG+CRP+SKT F +L+V+ Sbjct: 2 RDIGIDVKPPERECE----DENCPFHGTLSVRGQLLRGKVVKV-YGKTAVIERELIRYVPKFERYMKKRSKLHAHNPRCIRARPGDIVTIGECRPISKTKSFVILEVV 104 The following BLAST results are available for this feature:
BLAST of FC924872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >FC924872 ID=FC924872; Name=FC924872; organism=Citrus clementina; type=EST; length=624bpback to top |