FC924872
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_NITMS (30S ribosomal protein S17P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps17p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.634e-15 Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKV 487 ++IGL K P+ E DK CPF G ++IRG++ G +K +TI ++++ + K++RY + S+I AH+ C V+ GD+V+ +CRP+SK+V + V++V Sbjct: 3 RNIGLKVKEPKRECE----DKNCPFHGELAIRGKLFDGKVTGSKAKQTITLQKDAPVYFNKFKRYARGKSSIHAHVPGCIDVESGDNVLTAECRPISKSVSYVVVEV 105
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_THEAC (30S ribosomal protein S17P OS=Thermoplasma acidophilum GN=rps17p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14 Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 161 FWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 + ++IGL K P E D CP+ G +S+RG++L G SA M ++ +V R Y ++ KY+R + H+ C ++K GD V +CR L+KT+ F +++ + Sbjct: 2 YTRNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIPKYERKATKIKKYHVHVPDCIKIKPGDTVRFAECRKLAKTISFVIVEKV 107
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_PYRAE (30S ribosomal protein S17P OS=Pyrobaculum aerophilum GN=rps17p PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13 Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVL 481 K+IG+ P ++ D CP+ G + +R ++L T +M++ +V +LH+++KY RYE+R + + C VK GD VII + RPLSKT+ + V+ Sbjct: 4 KNIGIPHVLPPASVCD---DPLCPWHGHLKVRLKLLEVTVEKVRMHKAAVVIHEWLHYIRKYNRYERRRKRMRVRVPECIEVKPGDKVIIAETRPLSKTIAWVVI 105
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17L_METAC (Putative 30S ribosomal protein S17P-like OS=Methanosarcina acetivorans GN=MA_2024 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13 Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 2 Query: 167 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLK 484 + IG+ G K P E D +CPF G +S+RG+IL G S KM + I+++R + KYQR ++ S I A+ PC K GD + I +CRPL+K F V++ Sbjct: 2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVMKRYREKWSYKYQRKQRVSSKIHAYSPPCMEAKIGDIITIAECRPLNKGSSFVVIE 104
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_THEVO (30S ribosomal protein S17P OS=Thermoplasma volcanium GN=rps17p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13 Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 2 Query: 167 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVI 490 ++IGL P E D CPF G + +RG++L G S M R+++V R Y ++ KY+R + H+ C ++ GD V +CR L+KT+ F V++ + Sbjct: 4 RNIGLDVSVP----EKECTDPHCPFHGNLPVRGQVLTGKVISTAMTRSVVVAREYQQYIPKYERKATKIKKYHVHVPDCIELRVGDTVRFAECRKLAKTISFVVVEKV 107
BLAST of FC924872 vs. ExPASy Swiss-Prot
Match: RS17_NANEQ (30S ribosomal protein S17P OS=Nanoarchaeum equitans GN=rps17p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13 Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 2 Query: 224 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAG 499 DKKCP G + +RG G N+T+ + +++ KY+RYE R + I A++ C + +KEGD+V+IG+ RPLSKT F VL + G Sbjct: 16 DKKCPHHGHLKVRGFFFKGKVIKKSDNKTVKIEIIRYYWLPKYERYELRRTRITAYLPECLKDIKEGDYVLIGETRPLSKTKHFVVLGKLKKG 108 The following BLAST results are available for this feature:
BLAST of FC924872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >FC924872 ID=FC924872; Name=FC924872; organism=Citrus clementina; type=EST; length=624bpback to top |