FC924886

Overview
NameFC924886
Unique NameFC924886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3642 contig Ccv1_Contig3642:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924886 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.650e-51
Identity = 104/193 (53.89%), Postives = 132/193 (68.39%), Query Frame = 3
Query:   30 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKR 608
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GT C+                  IV PDL+VL L+I KKG+ ++ G+T+   P+  GPKRA+ IRK F L+K+DDVR +V    R    K  K  +KAPKIQRLVTP  LQRKR
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTSCY--RPRRNGERKRKSVRGAIVGPDLAVLALIITKKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV---IRREVVKGDKTYTKAPKIQRLVTPQRLQRKR 188          
BLAST of FC924886 vs. ExPASy Swiss-Prot
Match: RS6_DICDI (40S ribosomal protein S6 OS=Dictyostelium discoideum GN=rps6 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.208e-48
Identity = 104/194 (53.61%), Postives = 125/194 (64.43%), Query Frame = 3
Query:   30 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRA 611
            MK NIA P  G QKK+ I+D  K+R F +KRI QEV    LG+EFKGYVFKI GG D +GFPM QGV  P RVRLLL   + CF                 CIV+ D++ L L+IVKKG+ ++PGLTD   P  +GPKRAS IRKLF LSK++DVR +V   R    T   K  SKAPKIQRLVTP T+ R++A
Sbjct:    1 MKLNIAYPVNGSQKKINIEDKNKVRCFMEKRIGQEVEATTLGDEFKGYVFKITGGNDTEGFPMMQGVGAPTRVRLLLDGRSGCF--KPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAEIPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFV-IRRELPATDKRKAKSKAPKIQRLVTPTTVARRKA 191          
BLAST of FC924886 vs. ExPASy Swiss-Prot
Match: RS6_LEIMA (40S ribosomal protein S6 OS=Leishmania major GN=RPS6 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 91/194 (46.91%), Postives = 114/194 (58.76%), Query Frame = 3
Query:   30 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRK 605
            MK NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R+
Sbjct:    1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARR 191          
BLAST of FC924886 vs. ExPASy Swiss-Prot
Match: RS6_LEIIN (40S ribosomal protein S6 OS=Leishmania infantum GN=RPS6 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 90/194 (46.39%), Postives = 113/194 (58.25%), Query Frame = 3
Query:   30 MKFNIANPTTGCQKKLEIDDDQKLRAFF-DKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVS-KAPKIQRLVTPLTLQRK 605
            M  NIA P  G  K+ EI D+   R    D R+  EV G   G EFKGY+F++ GG DK GFPM  GVL   RV LL+ RG   F                 C+++ D++++N+ I K G+  + G+TDT  PR  GPKRASKIRKLFNLS+ +DVRKYV   R     K+GKK   KAPKIQRL+TP    R+
Sbjct:    1 MYLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRR---VVKSGKKDRLKAPKIQRLITPRVKARR 191          
BLAST of FC924886 vs. ExPASy Swiss-Prot
Match: RS6_ENCCU (40S ribosomal protein S6 OS=Encephalitozoon cuniculi GN=RPS6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 58/165 (35.15%), Postives = 84/165 (50.91%), Query Frame = 3
Query:   78 EIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQ 572
            EI+   ++R  +DK+I  +  G  LGEEF+G + +I GG D QGFPM  G LT  RVR LL +G   +                  IVS ++ VLNL+I++ GE ++ GLT+        P++  K+RK+F +  E+   K V  Y R           K PKI+
Sbjct:    3 EIERRNEVR-LYDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVRPLLSKGDAGY--RCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEE---KNVVGYIRNILKSECDDPKKIPKIR 161          
The following BLAST results are available for this feature:
BLAST of FC924886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASHGO4.650e-5153.8940S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_DICDI8.208e-4853.6140S ribosomal protein S6 OS=Dictyostelium discoide... [more]
RS6_LEIMA1.188e-3846.9140S ribosomal protein S6 OS=Leishmania major GN=RP... [more]
RS6_LEIIN7.700e-3846.3940S ribosomal protein S6 OS=Leishmania infantum GN... [more]
RS6_ENCCU4.393e-1735.1540S ribosomal protein S6 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM15FM1 TF Citrus clementina cDNA clone KN0AAP6YM15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924886 ID=FC924886; Name=FC924886; organism=Citrus clementina; type=EST; length=684bp
CTGGGTTAGTCTGATAGCTGCAGAACAAAATGAAGTTCAATATTGCAAAT
CCCACCACTGGGTGCCAAAAGAAGCTCGAAATCGACGATGACCAGAAACT
CCGAGCATTTTTCGACAAGAGGATCTCACAAGAAGTTAGTGGTGATGCTC
TTGGGGAGGAGTTCAAAGGTTATGTCTTTAAGATAATGGGAGGCTGTGAC
AAGCAAGGTTTCCCAATGAAGCAAGGAGTGTTGACTCCTGGACGTGTTCG
TCTTCTGCTCCACAGAGGTACTCCTTGCTTCCGTGGATATGGAAGGAGAG
ATGGAGAGCGTCGGAGGAAATCTGTTCGTGGATGCATTGTTAGTCCAGAT
CTCTCAGTGTTGAACTTGGTCATCGTGAAAAAGGGAGAACATGACCTTCC
TGGACTTACTGACACTGAGAAGCCCAGGATGAGAGGTCCGAAGAGAGCCT
CAAAGATCAGGAAGTTGTTTAACCTTTCCAAAGAAGATGATGTTCGGAAG
TATGTCAACACATACCGTCGGACCTTTACAACCAAAACTGGTAAAAAGGT
TAGCAAGGCTCCTAAAATTCAGAGGCTGGTGACTCCTTTGACTTTGCAGA
GGAAGCGCGCCAGAATTGCTGAGAAGAAGCAGAGAATTGCCCAGGCCCAA
GCAGAGGCTGCCTGATACCAGAAGCTCCTTGCTA
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