FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_YEAST (C-1-tetrahydrofolate synthase, cytoplasmic OS=Saccharomyces cerevisiae GN=ADE3 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.365e-66
Identity = 125/237 (52.74%), Postives = 165/237 (69.62%), Query Frame = 3
Query:   66 LQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            L++++PVP+DIDI+ + +P  I+++AQEL +  +  +LYG YKAK+   V++ L+   +G Y++V GITPTPLGEGKSTTT+GL QAL A L K  +  +RQPS GPT G+K       YSQVIPMDEFNLHLTGDIH               R+FHE +Q + A F     P K G+R F+  M RRL +LGI KT P+DLTPEEIN+FARL+IDP +IT ++V+D+NDR LR+IT
Sbjct:  314 LKLLTPVPSDIDISRAQQPKLINQLAQELGIYSHELELYGHYKAKISPKVIERLQTRQNGKYILVSGITPTPLGEGKSTTTMGLVQALTAHLGKPAIANVRQPSLGPTLGVKGGAAGGGYSQVIPMDEFNLHLTGDIHAIGAANNLLAAAIDTRMFHETTQKNDATFYNRLVPRKNGKRKFTPSMQRRLNRLGIQKTNPDDLTPEEINKFARLNIDPDTITIKRVVDINDRMLRQIT 550          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_DROME (C-1-tetrahydrofolate synthase, cytoplasmic OS=Drosophila melanogaster GN=pug PE=1 SV=4)

HSP 1 Score: 246.899 bits (629), Expect = 9.192e-65
Identity = 128/232 (55.17%), Postives = 160/232 (68.97%), Query Frame = 3
Query:   81 PVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            PVP+DI IA + +P  I+ +A+E+ L+     LYG  KAK+ LSVL+ L+    G+YVVV G+TPTPLGEGK+TT +GL QALGA   +  +  LRQPSQGPTFGIK       Y+QVIPM+EFNLHLTGDIH               RIFHE +Q DKAL++RL P  K G+R FS I  RRL+KLGI+KT P+ LT +E   FARLDIDP +I W +V+D+NDR+LR IT
Sbjct:  348 PVPSDIVIARAQKPKDIAVLAKEIGLEAREVSLYGNKKAKISLSVLERLKDKEVGHYVVVAGMTPTPLGEGKTTTLMGLVQALGAHKLRNTMAALRQPSQGPTFGIKGGAAGGGYAQVIPMEEFNLHLTGDIHAVSAANNLLAAQLDTRIFHENTQKDKALYDRLVPAIK-GQRKFSPIQLRRLQKLGITKTDPDTLTADEYGPFARLDIDPDTIMWERVVDINDRYLRTIT 578          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TM_YEAST (C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae GN=MIS1 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.016e-63
Identity = 123/237 (51.90%), Postives = 160/237 (67.51%), Query Frame = 3
Query:   66 LQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            L + SPVP+DIDI+ +  P HI ++A+EL +  +  +LYG YKAK+  ++   LE   +G YV+V GITPTPLGEGKSTTT+GL QAL A L K  +  +RQPS GPT G+K       Y+QVIPMDEFNLHLTGDIH               R+FHEA+Q + + F +   P K+G R F+  M RRLK+L I K  P+ LTPEE+ RFARL+I+P +IT R+V+D+NDR LR+IT
Sbjct:  338 LHLESPVPSDIDISRAQSPKHIKQVAEELGIHSHELELYGHYKAKISPNIFKRLESRENGKYVLVAGITPTPLGEGKSTTTMGLVQALSAHLGKPSIANVRQPSLGPTLGVKGGAAGGGYAQVIPMDEFNLHLTGDIHAISAANNLLAAAIDTRMFHEATQKNDSTFYKRLVPRKKGIRKFTPSMQRRLKRLDIEKEDPDALTPEEVKRFARLNINPDTITIRRVVDINDRMLRQIT 574          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TC_SPOFR (C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.603e-63
Identity = 130/248 (52.42%), Postives = 162/248 (65.32%), Query Frame = 3
Query:   39 MASSKTVRKLQV--VSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            +A +  +R L++  +SP P+DI IA S +P  ISE+A E+ L  N    YG+ KAK+ LSVLD +       Y+VV GITPTPLGEGKSTT +GL QAL A   +     +RQPSQGPTFG+K       YSQVIPM+EFNLHLTGDIH               RIFHE +Q D  LF+RL P  K G R FS I  RRLK+LGI+KT P+ LT  E ++FARL+ID + I W +V+D+NDR+LRKIT
Sbjct:  297 LAPTWPLRPLRITPLSPPPSDIVIARSQKPKDISELAHEIGLFSNEVSQYGRTKAKISLSVLDRMRNQQGAKYIVVAGITPTPLGEGKSTTLLGLVQALSAHRGRNSFAVMRQPSQGPTFGVKGGAAGGGYSQVIPMEEFNLHLTGDIHAGTAANNLLAAQMDARIFHELTQKDGPLFDRLVPKIK-GVRKFSPIQLRRLKRLGITKTDPDTLTEGEKSKFARLNIDTSKIMWNRVVDLNDRYLRKIT 543          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: C1TM_SCHPO (C-1-tetrahydrofolate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ade9 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.626e-53
Identity = 116/240 (48.33%), Postives = 148/240 (61.67%), Query Frame = 3
Query:   66 LQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGIS-KTKPEDL---TPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            L++  PVP+DI+IANS EP  IS +A+E+ +     + YG YKAKV L+V + L+   DG YVVV GITPTP GEGKST   GL QA+G  L K  + C+RQPSQGPTFG+K       Y+Q IPMD+FNLH+TGDIH               R+FHE +QSD AL  RL P  K G R     +  R  ++  S    PED+   +PE +  F RL++DP +I   +V+DVNDRFLR I
Sbjct:  332 LELKKPVPSDIEIANSQEPKLISNLAKEMGIYDTELENYGNYKAKVNLAVYERLKHRKDGNYVVVSGITPTPFGEGKSTVVAGLVQAMG-HLGKLGIACVRQPSQGPTFGVKGGAAGGGYAQFIPMDDFNLHMTGDIHAVTAANNLLVAALETRMFHENTQSDAALIKRLIPV-KNGRRVIPRGLIGRWNRICASHNMDPEDVNNASPELLKEFVRLNVDPDTIECNRVLDVNDRFLRSI 569          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBSL (Formate--tetrahydrofolate ligase OS=Vibrio splendidus (strain LGP32) GN=fhs PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.864e-36
Identity = 90/229 (39.30%), Postives = 117/229 (51.09%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            +DIDI  S    +ISE+A++  L  N +   G+YK+KV L+ L+ L    DG  VVV  ITPTPLGEGK+ TT+GL Q L A +++  + C+RQPS GP FG+K       YSQV PM++ NLHLTGDIH               R++HE                +EG  +F                       E  +    LDIDP  I WR+V+D NDR LR IT
Sbjct:    3 SDIDICRSTPLKNISEVAKQAGLHHNEHQPLGQYKSKVSLTSLERLASQQDGKLVVVTAITPTPLGEGKTVTTIGLAQGL-AKINQSAMACIRQPSMGPVFGVKGGAAGGGYSQVAPMEQLNLHLTGDIHAVTVAHNLASAAIDARLYHE---------------QREGLEAF-----------------------EARSGLKALDIDPRRIVWRRVLDHNDRALRMIT 192          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEWM (Formate--tetrahydrofolate ligase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fhs PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.295e-34
Identity = 85/228 (37.28%), Postives = 118/228 (51.75%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            DI+I+    P  IS+IA++  +K +    +G  KAKV +S+LD ++ + +G  V+V  +TPTP GEGK+ T++GL Q L A + +K   C+RQPS GP FGIK       YSQVIPM+E NLHLTGDIH               R+FHE                                    S+   ++ T +  +  A L+IDP  I WR+V+D N+R LR IT
Sbjct:    4 DIEISRQATPQPISDIAKKFGIKKDELSQFGDAKAKVKISILDRVKDNVEGKLVIVTAVTPTPFGEGKTVTSIGLTQGLNA-IGRKTCACIRQPSMGPVFGIKGGAAGGGYSQVIPMEEMNLHLTGDIHAVSSAHNLAAAAVDARLFHE------------------------------------SRLSADEYTLQ--SGSAPLNIDPEQILWRRVVDHNERSLRNIT 192          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_DESRM (Formate--tetrahydrofolate ligase OS=Desulfotomaculum reducens (strain MI-1) GN=fhs PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.425e-34
Identity = 71/132 (53.79%), Postives = 92/132 (69.70%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            VP+D++IA + E + I+EIA+ + L  +  DLYGKYKAK+ L VL +    A G  + +  ITPTPLGEGK+ TT+GLCQ LG  + KKV+T LRQPS GP FGIK       YSQV+PM++ N+H TGDIH
Sbjct:    4 VPSDLEIAQAHEMIPIAEIAKNIGLGEDDIDLYGKYKAKISLDVLRKFNDRAMGKLIDITAITPTPLGEGKTVTTIGLCQGLGK-IGKKVITTLRQPSMGPVFGIKGGAAGGGYSQVVPMEDINIHFTGDIH 134          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBPA (Formate--tetrahydrofolate ligase OS=Vibrio parahaemolyticus GN=fhs PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.431e-33
Identity = 90/228 (39.47%), Postives = 112/228 (49.12%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DI+I  +     I  IA++  L P  +D +GKYKAKV    L  L  + +G  V+V  ITPTPLGEGK+ TT+GL Q L A L + V+ C+RQPS GP FGIK       YSQV PM+E NLHLTGDIH               R+FHE                +EG  +F                       E       L ID  SITW++VMD NDR LR +
Sbjct:    3 SDIEICRNTPLSSIDVIAEKAGLLPEEFDTHGKYKAKVHPKCLARLNDNQNGKLVLVTAITPTPLGEGKTVTTIGLAQGL-AKLKQSVMACIRQPSMGPVFGIKGGAAGGGYSQVAPMEELNLHLTGDIHAVTAAHNLASAALDARLFHE---------------QREGYDAF-----------------------EARTGLKALKIDVESITWKRVMDHNDRALRMV 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBCH (Formate--tetrahydrofolate ligase OS=Vibrio cholerae GN=fhs PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.441e-33
Identity = 86/228 (37.72%), Postives = 113/228 (49.56%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            DI+I  +     I  IAQ+  L  N Y+ +G++KAKV L  L+ L     G +++V  ITPTPLGEGK+ TT+GL Q L A L+  V+ C+RQPS GP FG+K       YSQV PM+E NLHLTGDIH               RI+HE                               ++LG +  +     P        L IDP  + W++VMD NDR LR +T
Sbjct:    4 DIEICRATPLAPIDTIAQKAGLHANEYESHGQHKAKVSLHCLERLANKPKGKFILVTAITPTPLGEGKTVTTIGLAQGL-AKLNHSVMACIRQPSMGPIFGVKGGAAGGGYSQVAPMEELNLHLTGDIHAVTAAHNLAAAAIDARIYHE-------------------------------QRLGYADFERRTGMP-------ALRIDPKQVIWKRVMDHNDRALRMVT 192          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
C1TC_YEAST6.365e-6652.74C-1-tetrahydrofolate synthase, cytoplasmic OS=Sacc... [more]
C1TC_DROME9.192e-6555.17C-1-tetrahydrofolate synthase, cytoplasmic OS=Dros... [more]
C1TM_YEAST1.016e-6351.90C-1-tetrahydrofolate synthase, mitochondrial OS=Sa... [more]
C1TC_SPOFR8.603e-6352.42C-1-tetrahydrofolate synthase, cytoplasmic OS=Spod... [more]
C1TM_SCHPO1.626e-5348.33C-1-tetrahydrofolate synthase, mitochondrial OS=Sc... [more]
FTHS_VIBSL6.864e-3639.30Formate--tetrahydrofolate ligase OS=Vibrio splendi... [more]
FTHS_SHEWM1.295e-3437.28Formate--tetrahydrofolate ligase OS=Shewanella woo... [more]
FTHS_DESRM6.425e-3453.79Formate--tetrahydrofolate ligase OS=Desulfotomacul... [more]
FTHS_VIBPA1.431e-3339.47Formate--tetrahydrofolate ligase OS=Vibrio parahae... [more]
FTHS_VIBCH2.441e-3337.72Formate--tetrahydrofolate ligase OS=Vibrio cholera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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