FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LACLA (Formate--tetrahydrofolate ligase OS=Lactococcus lactis subsp. lactis GN=fhs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.607e-27
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA + +   I++IA+++ L  +  +LYGKYKAK+ L VLD+ +  ++G  V+V  I PTP GEGKST TVGL  A  A   K V+  LR+PS GP  GIK       ++QV+PM++ NLH TGDIH
Sbjct:    4 DIEIAQAADIQPITKIAEKIGLSFDDIELYGKYKAKIPLEVLDKFDQQSEGKLVLVTSINPTPAGEGKSTVTVGLADAF-ARQGKNVMVALREPSLGPVMGIKGGAAGGGFAQVLPMEDINLHFTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_HELMI (Formate--tetrahydrofolate ligase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=fhs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.607e-27
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA       I ++A+ L +  N  +LYG YKAK+ L   + L+   +G  ++V  I PTP GEGK+TTTVGL  AL   L KKVV  LR+PS GP+FG+K       Y+Q++PM++ NLH TGD H
Sbjct:    4 DIEIAQEATLQPIMDVARSLGIPENEVELYGNYKAKISLKAFERLKERREGKLILVTAINPTPAGEGKTTTTVGLGDALRR-LGKKVVIALREPSLGPSFGVKGGAAGGGYAQIVPMEDINLHFTGDFH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ENTFA (Formate--tetrahydrofolate ligase OS=Enterococcus faecalis GN=fhs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.607e-27
Identity = 62/129 (48.06%), Postives = 80/129 (62.02%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA +     I EIA+ + L  +  +LYGKYKAK+    L  LE   +G  ++V  I PTP GEGKST T+GL  AL   ++KK V  LR+PS GP  GIK       Y+QV+PM+E NLH TGD+H
Sbjct:    4 DINIAQAATLKPIQEIAETIGLSEDSLELYGKYKAKIDFPTLQSLEAQPEGKLILVTSINPTPAGEGKSTVTIGLGDALNQ-INKKTVIALREPSLGPVMGIKGGATGGGYAQVLPMEEINLHFTGDMH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOTH (Formate--tetrahydrofolate ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=fhs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.607e-27
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI IA S +   I+++A EL +     +LYGKYKAK+   + + ++   DG  V+V  I PTP GEGK+TTTVGL QA+ A + KK V  LR+PS GP  GIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 DIQIAQSCKMKPITQVAAELGIDEEELELYGKYKAKLSDKLWERVKDRPDGKLVLVTAINPTPAGEGKTTTTVGLGQAM-ARIGKKAVIALREPSLGPVMGIKGGAAGGGYSQVVPMEDINLHFTGDMH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOK5 (Formate--tetrahydrofolate ligase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=fhs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.607e-27
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI IA      +I +IA++LN+  +  +LYGKYKAK+  ++L   +G  +G  ++   I PTP GEGK+TT++G+  AL A LDK VV  LR+PS GP FGIK       Y+QV+PM++ NLH TGDIH
Sbjct:    5 SDIQIAQECSMENIKDIAKKLNIFEDEIELYGKYKAKIDYNLLKTTKGK-NGKLILCTAINPTPAGEGKTTTSIGVADAL-ARLDKSVVVALREPSMGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDIH 132          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOK1 (Formate--tetrahydrofolate ligase OS=Clostridium kluyveri (strain NBRC 12016) GN=fhs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.607e-27
Identity = 62/130 (47.69%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI IA      +I +IA++LN+  +  +LYGKYKAK+  ++L   +G  +G  ++   I PTP GEGK+TT++G+  AL A LDK VV  LR+PS GP FGIK       Y+QV+PM++ NLH TGDIH
Sbjct:    5 SDIQIAQECSMENIKDIAKKLNIFEDEIELYGKYKAKIDYNLLKTTKGK-NGKLILCTAINPTPAGEGKTTTSIGVADAL-ARLDKSVVVALREPSMGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDIH 132          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_FUSNN (Formate--tetrahydrofolate ligase OS=Fusobacterium nucleatum subsp. nucleatum GN=fhs PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.935e-27
Identity = 79/227 (34.80%), Postives = 107/227 (47.14%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            DI IA + +  +I EIA++L L  +  + YGKYKAKV L VL + +   +G  ++V  ITPTP GEGKST T+GL QAL   + K     +R+PS GP FG+K       Y+QV+PM++ NLH TGD+H                                                     +GI+           IN    L ID   ITW++V+D+NDR LR I
Sbjct:    3 DIQIAQAAKKENIVEIAKKLGLTEDDIEQYGKYKAKVNLDVLQKNK-RPNGKLILVTAITPTPAGEGKSTVTIGLTQALNK-MGKLSAAAIREPSLGPVFGMKGGAAGGGYAQVVPMEDINLHFTGDMH----------------------------------------------------AIGIAHNLISACIDNHINSGNALGIDVTKITWKRVVDMNDRALRNI 175          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS1_DESHY (Formate--tetrahydrofolate ligase 1 OS=Desulfitobacterium hafniense (strain Y51) GN=fhs1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.935e-27
Identity = 62/129 (48.06%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA       I+EIAQ L+L  +  +LYGKYKAKV  S  + L+   D   ++V  I PTP GEGK+TTTVGL QA+   + K  +  LR+PS GP FG+K       Y+QV+PM++ NLH TGD H
Sbjct:    4 DIEIAQEATMKPITEIAQGLDLLEDEIELYGKYKAKVNFSAWERLKDKPDAKLILVTAINPTPAGEGKTTTTVGLGQAMSK-IGKNAMIALREPSLGPCFGVKGGAAGGGYAQVVPMEDINLHFTGDFH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_BACLD (Formate--tetrahydrofolate ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=fhs PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.298e-26
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   E   I+EIA++LN+     + +G  KAK+ L + + L+   DG  ++V  I PTP GEGKST TVGL QAL   + KK +  +R+PS GPT G+K       YSQV+PM++ NLH TGD+H
Sbjct:    6 SDIEIAQRTELKPITEIARKLNINDEEIECFGCTKAKISLKIFERLKEKPDGQVILVTSINPTPAGEGKSTVTVGLSQALWQ-IGKKSIVAMREPSLGPTMGLKGGAAGGGYSQVLPMEDINLHFTGDMH 134          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THEAB (Formate--tetrahydrofolate ligase OS=Thermosipho africanus (strain TCF52B) GN=fhs PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.695e-26
Identity = 59/129 (45.74%), Postives = 86/129 (66.67%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA   +   I++IA+++++   + + YGKY AKV L + ++++ + DG  ++V  +TPTP GEGK+TT++GL  AL   L KK +  LR+PS GP FGIK       YSQV+PM+  NLH TGDIH
Sbjct:    4 DIEIAREAKLEKITKIAEKIDISEEYVEPYGKYIAKVDLKIWEKVKNNKDGKLILVTAMTPTPAGEGKTTTSIGLSMALNR-LGKKSIVTLREPSLGPVFGIKGGAAGGGYSQVLPMENINLHFTGDIH 131          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_LACLA7.607e-2748.06Formate--tetrahydrofolate ligase OS=Lactococcus la... [more]
FTHS_HELMI7.607e-2746.51Formate--tetrahydrofolate ligase OS=Heliobacterium... [more]
FTHS_ENTFA7.607e-2748.06Formate--tetrahydrofolate ligase OS=Enterococcus f... [more]
FTHS_CLOTH7.607e-2748.84Formate--tetrahydrofolate ligase OS=Clostridium th... [more]
FTHS_CLOK57.607e-2747.69Formate--tetrahydrofolate ligase OS=Clostridium kl... [more]
FTHS_CLOK17.607e-2747.69Formate--tetrahydrofolate ligase OS=Clostridium kl... [more]
FTHS_FUSNN9.935e-2734.80Formate--tetrahydrofolate ligase OS=Fusobacterium ... [more]
FTHS1_DESHY9.935e-2748.06Formate--tetrahydrofolate ligase 1 OS=Desulfitobac... [more]
FTHS_BACLD1.298e-2646.15Formate--tetrahydrofolate ligase OS=Bacillus liche... [more]
FTHS_THEAB1.695e-2645.74Formate--tetrahydrofolate ligase OS=Thermosipho af... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
back to top