FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_BACP2 (Formate--tetrahydrofolate ligase OS=Bacillus pumilus (strain SAFR-032) GN=fhs PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.891e-26
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DIDIA   +   I +IA +L L     + YG  KAK+ L++ D L+   +G+ ++V  I PTP GEGKST TVGL QA    + KK +  +R+PS GPT GIK       YSQV+PM+E NLH TGD H
Sbjct:    7 SDIDIAQQAKLRPIQDIAAKLQLHDEELECYGFTKAKISLTIFDRLKEQKEGHVILVTSINPTPAGEGKSTVTVGLGQAFEK-IGKKAIIAMREPSLGPTMGIKGGAAGGGYSQVLPMEEINLHFTGDFH 135          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_PETMO (Formate--tetrahydrofolate ligase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=fhs PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA S +   I  IA EL++   +Y+LYGK  AKV    L+EL    DG  V+V  ITPTP GEGK+TT++ L  AL     + +VT LR+PS GP  GIK       YSQV+PM++ NLH TGDIH
Sbjct:    3 SDIEIARSAKLKKIDLIANELDIPEEYYNLYGKNIAKVSHKYLNELNFKNDGNLVMVTAITPTPAGEGKTTTSISLSMALNKIHKRSIVT-LREPSLGPVMGIKGGAAGGGYSQVLPMEDINLHFTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_AERHH (Formate--tetrahydrofolate ligase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fhs PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.775e-26
Identity = 79/229 (34.50%), Postives = 107/229 (46.72%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            +DI+I+     L I  +A+ L +  +    YG YK K+ L +L  L   A G  V+V  ITPTPLGEGK+ TT+GL   L       + T +RQPS GP FG+K       ++QV+PM+E NLHLTGD H               R+FHE    D+                FS        + G+                 RLDID  +I W + +D+NDR LR +T
Sbjct:    3 SDIEISRQSPRLPIHALAERLAIPSHQLHPYGHYKGKLSLELLKSLPKPA-GKLVLVSAITPTPLGEGKTVTTLGLSMGLNHIGQPSIAT-IRQPSLGPVFGVKGGAAGGGHAQVVPMEEMNLHLTGDFHALTAAHNLAAAALDARLFHERKLGDQ----------------FS-------ARTGLQ----------------RLDIDADNILWPRTLDMNDRALRHLT 190          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOCE (Formate--tetrahydrofolate ligase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=fhs PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.931e-26
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI IA   +  HI++IA+ L +     + YG YKAK+   + D+++   DG  V+V  I PTP GEGK+TTTVGL QA+ A + K  V  LR+PS GP  GIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIQIAQRCKMHHIADIAKNLGIDTEDIEFYGNYKAKLSDKLWDKVKNKKDGKLVLVTAINPTPAGEGKTTTTVGLGQAM-ARIGKNAVIALREPSMGPVMGIKGGAAGGGYAQVVPMEDINLHFTGDMH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_GRABC (Formate--tetrahydrofolate ligase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=fhs PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.440e-26
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQE-LNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +D +IA +     I ++A E L +   H   YG YKAK+ L+ L  L+   DG  V+V  I+PTP GEGK+TTTVGL  AL   + KK V CLR+PS GP FG+K       Y+QV+PM++ NLH TGD H
Sbjct:   18 SDAEIAQAAFMRPIVDVAAEKLGIAAEHLAPYGHYKAKIDLNYLSSLDSRPDGKLVLVTAISPTPAGEGKTTTTVGLTDALN-HIGKKAVACLREPSLGPCFGVKGGAAGGGYAQVVPMEDINLHFTGDFH 147          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_PROMH (Formate--tetrahydrofolate ligase OS=Proteus mirabilis (strain HI4320) GN=fhs PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.410e-26
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+I++    L I +IA+++N+  +  + YGKYKAK   S+  ++     G  V+V  I PTP GEGK+T TVGL QAL   L K  +  LR+PS GP FG+K       YSQV+PM++ NLH TGD H
Sbjct:    3 SDIEISHQAPLLPIQDIAKKINVDQDDIEFYGKYKAKFSQSIWSKITSKKQGKLVLVTSINPTPAGEGKTTVTVGLGQALNQ-LGKSAIIALREPSLGPCFGLKGGAAGGGYSQVVPMEDLNLHFTGDFH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STRSY (Formate--tetrahydrofolate ligase OS=Streptococcus suis (strain 05ZYH33) GN=fhs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.098e-25
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DIDIA S+    I+EI +++ +  +  +LYGKYKAK+    ++ ++ +A G  ++V  I PTP GEGKST T+GL  AL   + KK +  LR+PS GP  GIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIDIAQSITLKPITEIVEKVGISFDDIELYGKYKAKLSFDKINAVKDNAPGKLILVTAINPTPAGEGKSTITIGLADALSK-IGKKTMIALREPSLGPVMGIKGGAAGGGYAQVLPMEDINLHFTGDMH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STRS2 (Formate--tetrahydrofolate ligase OS=Streptococcus suis (strain 98HAH33) GN=fhs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.098e-25
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DIDIA S+    I+EI +++ +  +  +LYGKYKAK+    ++ ++ +A G  ++V  I PTP GEGKST T+GL  AL   + KK +  LR+PS GP  GIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIDIAQSITLKPITEIVEKVGISFDDIELYGKYKAKLSFDKINAVKDNAPGKLILVTAINPTPAGEGKSTITIGLADALSK-IGKKTMIALREPSLGPVMGIKGGAAGGGYAQVLPMEDINLHFTGDMH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_RHILO (Formate--tetrahydrofolate ligase OS=Rhizobium loti GN=fhs PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.435e-25
Identity = 56/135 (41.48%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   75 VSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            ++ V +DI+IA + +   I EI Q++ +   H   YG  KAK+    +  ++G+ DG  ++V  I PTP GEGK+TTTVGL   L   + KK + C+R+ S GP FG+K       Y+QV+PM++ NLH TGD H
Sbjct:    1 MAEVKSDIEIARAAKKKQIQEIGQKIGIPTEHLLPYGHDKAKISAEFIKSVKGNKDGKLILVTAINPTPAGEGKTTTTVGLGDGLNR-IGKKAIVCIREASLGPNFGVKGGAAGGGYAQVVPMEDMNLHFTGDFH 134          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ARTAT (Formate--tetrahydrofolate ligase OS=Arthrobacter aurescens (strain TC1) GN=fhs PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.874e-25
Identity = 77/230 (33.48%), Postives = 111/230 (48.26%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +D++IA++   L +  IA+   +  +  +LYG YKAK+  + L    G A G  V+V  ++PTP GEGKSTTTVGL  +L A    KV+  LR+PS GP  G+K       YSQV+PMD+ NLH TGD                   FH  + ++ AL                                   L    I +  +L IDP  +T+++V+D+NDR LR++
Sbjct:    6 VLSDLEIAHNATMLPVEAIAERAGINVDALELYGPYKAKINTAKLVLPRGKAPGKVVLVSAMSPTPAGEGKSTTTVGLADSL-ARAGHKVMIALREPSLGPILGMKGGATGGGYSQVLPMDDINLHFTGD-------------------FHAITSANNALM---------------------------------ALVDNHIFQGNQLGIDPRRMTFKRVLDMNDRALREV 182          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_BACP22.891e-2646.92Formate--tetrahydrofolate ligase OS=Bacillus pumil... [more]
FTHS_PETMO3.775e-2649.23Formate--tetrahydrofolate ligase OS=Petrotoga mobi... [more]
FTHS_AERHH3.775e-2634.50Formate--tetrahydrofolate ligase OS=Aeromonas hydr... [more]
FTHS_CLOCE4.931e-2646.51Formate--tetrahydrofolate ligase OS=Clostridium ce... [more]
FTHS_GRABC6.440e-2647.33Formate--tetrahydrofolate ligase OS=Granulibacter ... [more]
FTHS_PROMH8.410e-2645.38Formate--tetrahydrofolate ligase OS=Proteus mirabi... [more]
FTHS_STRSY1.098e-2544.96Formate--tetrahydrofolate ligase OS=Streptococcus ... [more]
FTHS_STRS21.098e-2544.96Formate--tetrahydrofolate ligase OS=Streptococcus ... [more]
FTHS_RHILO1.435e-2541.48Formate--tetrahydrofolate ligase OS=Rhizobium loti... [more]
FTHS_ARTAT1.874e-2533.48Formate--tetrahydrofolate ligase OS=Arthrobacter a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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