FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEB5 (Formate--tetrahydrofolate ligase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fhs PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33
Identity = 86/227 (37.89%), Postives = 114/227 (50.22%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D+DI++     +I+EI  +L L P    L+G  KAKV LSVL  L G   G  ++V  +TPTP GEGK+ T++GL Q+L A + +K   C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R+FHE                                   + KT+ E  + +     A LDIDP  I W +V+D NDR LR+I
Sbjct:    4 DMDISSRASLKNITEIGADLGLLPEEMMLFGHTKAKVELSVLQRLAGQRKGKLIIVTAVTPTPHGEGKTVTSIGLTQSLNA-IGQKACACIRQPSMGPVFGVKGGAAGGGYAQVVPMQEMNLHLTGDIHAVSSAHNLGAAAIAARLFHETR---------------------------------LGKTEFEAQSEQ-----AFLDIDPNEIRWHRVVDHNDRCLRQI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHESW (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain W3-18-1) GN=fhs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.439e-33
Identity = 84/227 (37.00%), Postives = 114/227 (50.22%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D++I++     +++E+  EL L P    L+G  KAKV LSV   L G + G  ++V  +TPTP GEGK+ T++GL Q+L A + KK   C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R+FHE+                            RL K+       +          A LDIDPA I W +V+D NDR LR++
Sbjct:    4 DMEISSRASLTNVAELGAELGLLPEEMLLFGSTKAKVDLSVQQRLAGQSRGKLIIVTAVTPTPHGEGKTVTSIGLTQSLKA-IGKKACACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSSAHNLGAAAIAARLFHES----------------------------RLGKVEFEAQSGQ----------AFLDIDPAQIRWHRVLDHNDRCLRQV 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEPC (Formate--tetrahydrofolate ligase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fhs PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.439e-33
Identity = 84/227 (37.00%), Postives = 114/227 (50.22%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D++I++     +++E+  EL L P    L+G  KAKV LSV   L G + G  ++V  +TPTP GEGK+ T++GL Q+L A + KK   C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R+FHE+                            RL K+       +          A LDIDPA I W +V+D NDR LR++
Sbjct:    4 DMEISSRASLTNVAELGAELGLLPEEMLLFGSTKAKVDLSVQQRLAGQSRGKLIIVTAVTPTPHGEGKTVTSIGLTQSLKA-IGKKACACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSSAHNLGAAAIAARLFHES----------------------------RLGKVEFEAQSGQ----------AFLDIDPAQIRWHRVLDHNDRCLRQV 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEB9 (Formate--tetrahydrofolate ligase OS=Shewanella baltica (strain OS195) GN=fhs PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.582e-32
Identity = 86/227 (37.89%), Postives = 114/227 (50.22%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D+DI++     +I+EI  +L L P    L+G  KAKV LSVL  L G   G  ++V  +TPTP GEGK+ T++GL Q+L A + +K   C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R+FHEA                                  + KT+ E  + +     A LDI P  I W +V+D NDR LR+I
Sbjct:    4 DMDISSRASLKNITEIGVDLGLLPEEMMLFGHTKAKVELSVLQRLAGQRKGKLIIVTAVTPTPHGEGKTVTSIGLTQSLNA-IGQKACACIRQPSMGPVFGVKGGAAGGGYAQVVPMQEMNLHLTGDIHAVSSAHNLGAAAIAARLFHEAR---------------------------------LGKTEFEAQSGQ-----AFLDIAPNEIRWHRVVDHNDRCLRQI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBHB (Formate--tetrahydrofolate ligase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=fhs PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.067e-32
Identity = 85/228 (37.28%), Postives = 111/228 (48.68%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DI+I  +     I+ +A    L P+  D +GK+KAKV    L+ L  + DG  V+V  ITPTPLGEGK+ TT+GL Q L   +++ V+ C+RQPS GP FG+K       YSQV PMDE NLHLTGDIH               R++HE                +EG  +F                       E       L ID   ITW++VMD NDR LR +
Sbjct:    3 SDIEICRNTPLSSIATVAANAGLLPHELDTHGKHKAKVHPQCLERLTDNQDGKLVLVTAITPTPLGEGKTVTTIGLSQGLSK-INQSVMACIRQPSMGPVFGVKGGAAGGGYSQVAPMDELNLHLTGDIHAVTAAHNLASAALDARLYHE---------------QREGYDAF-----------------------EARTSLRALKIDVERITWKRVMDHNDRALRMV 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEB2 (Formate--tetrahydrofolate ligase OS=Shewanella baltica (strain OS223) GN=fhs PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.067e-32
Identity = 85/227 (37.44%), Postives = 114/227 (50.22%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D+DI++     +I+E+  +L L P    L+G  KAKV LSVL  L G   G  ++V  +TPTP GEGK+ T++GL Q+L A + +K   C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R+FHEA                                  + KT+ E  + +     A LDI P  I W +V+D NDR LR+I
Sbjct:    4 DMDISSRASLKNITELGADLGLLPEEMMLFGHTKAKVELSVLQRLAGQRKGKLIIVTAVTPTPHGEGKTVTSIGLTQSLNA-IGQKACACIRQPSMGPVFGVKGGAAGGGYAQVVPMQEMNLHLTGDIHAVSSAHNLGAAAIAARLFHEAR---------------------------------LGKTEFEAQSGQ-----AFLDIAPNEIRWHRVVDHNDRCLRQI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBVY (Formate--tetrahydrofolate ligase OS=Vibrio vulnificus (strain YJ016) GN=fhs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 85/228 (37.28%), Postives = 111/228 (48.68%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DIDI  +     I +IA +  L  + ++ +G YKAKV    +  L    DG  V+V  ITPTPLGEGK+ TT+GL Q L + L++ V+ C+RQPS GP FG+K       YSQV PMDE NLHLTGDIH               RI+HE                + G ++F                       E       L IDP  + W++VMD NDR LRK+
Sbjct:    3 SDIDICRTTPLKPIEQIAAKAGLLADEFETHGLYKAKVSARCVKRLAEQQDGKLVLVTAITPTPLGEGKTVTTIGLAQGLQS-LNQSVMACIRQPSMGPVFGVKGGAAGGGYSQVAPMDELNLHLTGDIHAVTAAHNLAAAAIDARIYHE---------------QRAGYQAF-----------------------EARTGLPALRIDPDRVVWKRVMDHNDRALRKV 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBVU (Formate--tetrahydrofolate ligase OS=Vibrio vulnificus GN=fhs PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 85/228 (37.28%), Postives = 111/228 (48.68%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DIDI  +     I +IA +  L  + ++ +G YKAKV    +  L    DG  V+V  ITPTPLGEGK+ TT+GL Q L + L++ V+ C+RQPS GP FG+K       YSQV PMDE NLHLTGDIH               RI+HE                + G ++F                       E       L IDP  + W++VMD NDR LRK+
Sbjct:    3 SDIDICRTTPLKPIEQIAAKAGLLADEFETHGLYKAKVSARCVKRLAEQQDGKLVLVTAITPTPLGEGKTVTTIGLAQGLQS-LNQSVMACIRQPSMGPVFGVKGGAAGGGYSQVAPMDELNLHLTGDIHAVTAAHNLAAAAIDARIYHE---------------QRAGYQAF-----------------------EARTGLPALRIDPDRVVWKRVMDHNDRALRKV 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ALISL (Formate--tetrahydrofolate ligase OS=Aliivibrio salmonicida (strain LFI1238) GN=fhs PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32
Identity = 86/229 (37.55%), Postives = 108/229 (47.16%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            +DI+I  +   + +  IA  L L  +     G+YKAKV +  L  LE    G  ++V  ITPTPLGEGK+ TT+GL Q L A L + V  C+RQPS GP FG+K       YSQV PM+E NLHLTGDIH               RI+HE                + G   FS                       E N    L IDP  + W++VMD NDR LR +T
Sbjct:    3 SDIEICQTATLIRMKTIASNLGLHDDDITPQGRYKAKVNIDALKHLEDKPSGKLILVTAITPTPLGEGKTVTTIGLAQGL-AKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPMEELNLHLTGDIHAITAAHNLASAAIDARIYHE---------------QRLGYNIFS-----------------------EKNDLPALRIDPTQVVWKRVMDHNDRALRMVT 192          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHESH (Formate--tetrahydrofolate ligase OS=Shewanella sediminis (strain HAW-EB3) GN=fhs PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32
Identity = 82/228 (35.96%), Postives = 113/228 (49.56%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            DI+I+   +   I++IA++  +  +    +G  KAKV LS+L  ++ + +G  V+V  +TPTP GEGK+ T++GL Q L A L KK   C+RQPS GP FGIK       YSQV+PM+E NLHLTGDIH               R+FHE+  +                                           E +  A L+IDP  I WR+V+D N+R LR IT
Sbjct:    4 DIEISRQTKHRPITQIAEKFGITSSELVPFGDAKAKVKLSILKRVDDNLEGKLVIVTAVTPTPFGEGKTVTSIGLTQGLNA-LGKKACACIRQPSMGPVFGIKGGAAGGGYSQVVPMEELNLHLTGDIHAVSSAHNLAAAAIDARLFHESRMTADEY--------------------------------------REQSGQAPLNIDPEKILWRRVVDHNERSLRNIT 192          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_SHEB53.189e-3337.89Formate--tetrahydrofolate ligase OS=Shewanella bal... [more]
FTHS_SHESW5.439e-3337.00Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]
FTHS_SHEPC5.439e-3337.00Formate--tetrahydrofolate ligase OS=Shewanella put... [more]
FTHS_SHEB91.582e-3237.89Formate--tetrahydrofolate ligase OS=Shewanella bal... [more]
FTHS_VIBHB2.067e-3237.28Formate--tetrahydrofolate ligase OS=Vibrio harveyi... [more]
FTHS_SHEB22.067e-3237.44Formate--tetrahydrofolate ligase OS=Shewanella bal... [more]
FTHS_VIBVY2.699e-3237.28Formate--tetrahydrofolate ligase OS=Vibrio vulnifi... [more]
FTHS_VIBVU2.699e-3237.28Formate--tetrahydrofolate ligase OS=Vibrio vulnifi... [more]
FTHS_ALISL2.699e-3237.55Formate--tetrahydrofolate ligase OS=Aliivibrio sal... [more]
FTHS_SHESH6.013e-3235.96Formate--tetrahydrofolate ligase OS=Shewanella sed... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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