FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STAES (Formate--tetrahydrofolate ligase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=fhs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.137e-22
Identity = 74/228 (32.46%), Postives = 110/228 (48.25%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +D++IAN  +   ISEIA+++ +  +  + YG YKAK+ ++ + E E    G  V+V  ++PTP GEGKST TVGL  A    L+  V   LR+P+ GPTFGIK       Y+QV+PM++ NLH  GD                   FH  + ++ AL             +F +    +  +LG                     ID   I W++V+D+NDR LR +
Sbjct:    5 SDLEIANLSKLKPISEIARKVGITEDALEPYGHYKAKIDINQIQEQEKK--GKVVLVTAMSPTPAGEGKSTVTVGLADAFNK-LNHNVTVALREPALGPTFGIKGGATGGGYAQVLPMEDINLHFNGD-------------------FHAITTANNAL------------SAFIDNHLHQGNELG---------------------IDQRRIEWKRVLDMNDRALRHV 177          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STAEQ (Formate--tetrahydrofolate ligase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=fhs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.137e-22
Identity = 74/228 (32.46%), Postives = 110/228 (48.25%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +D++IAN  +   ISEIA+++ +  +  + YG YKAK+ ++ + E E    G  V+V  ++PTP GEGKST TVGL  A    L+  V   LR+P+ GPTFGIK       Y+QV+PM++ NLH  GD                   FH  + ++ AL             +F +    +  +LG                     ID   I W++V+D+NDR LR +
Sbjct:    5 SDLEIANLSKLKPISEIARKVGITEDALEPYGHYKAKIDINQIQEQEKK--GKVVLVTAMSPTPAGEGKSTVTVGLADAFNK-LNHNVTVALREPALGPTFGIKGGATGGGYAQVLPMEDINLHFNGD-------------------FHAITTANNAL------------SAFIDNHLHQGNELG---------------------IDQRRIEWKRVLDMNDRALRHV 177          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_METNO (Formate--tetrahydrofolate ligase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=fhs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.137e-22
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +P DI+IA +     IS IA+++ +       +G++ AK+  + +  LE   +G  ++V  I+PTP GEGK+TTTVGL  AL   + KK V CLR+PS GP FG+K        SQV+PM+  NLH TGD H
Sbjct:    1 MPTDIEIARAATLQPISAIAEKIGIPDAALHPHGRHIAKIDHAHIASLEAKPEGKLILVTAISPTPAGEGKTTTTVGLGDALNR-IGKKAVICLREPSLGPCFGMKGGAAGGGKSQVVPMEAINLHFTGDFH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_HALWD (Formate--tetrahydrofolate ligase OS=Haloquadratum walsbyi (strain DSM 16790) GN=fhs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.137e-22
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 3
Query:   87 PADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSA---DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            P D +IA + +   I ++ +  +L  +    YG+Y AK+    +D L   A   +   ++V G+TPTP+GEGK+ TTVGL Q L   LD++ +  +R+PS GP FG+K       YSQV+PM+E NLH TGD+H
Sbjct:   17 PTDYEIAQNADMTPIWDLLEPWDLGNDDLSYYGEYTAKLSHDAVDHLREEAKTRENNLILVTGMTPTPMGEGKTVTTVGLGQTLN-HLDEEAMIAIREPSLGPVFGVKGGAAGGGYSQVLPMEEINLHFTGDLH 149          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS1_LACAC (Formate--tetrahydrofolate ligase 1 OS=Lactobacillus acidophilus GN=fhs1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.137e-22
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSAD-GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   + L I EIA ++NLK    + YG+ KAK+    ++ +  +   G  ++V  I+PTP GEGKST T+GL  A+   L K  +  LR+PS GP FG+K        +Q+IPM++ NLH TGD+H
Sbjct:    3 SDIEIAQETKELPIEEIAAKVNLKKEDLEPYGQDKAKINWKAINRIRKNDKLGKLILVTSISPTPAGEGKSTITIGLGDAIHNQLHKNTLIALREPSMGPVFGLKGGATGGGRAQIIPMEDINLHFTGDMH 133          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CHLSY (Formate--tetrahydrofolate ligase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=fhs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.485e-22
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            I+ IA+ L L   + + YG+Y+ K+ L+ LD+      G YV+V  ITPTPLGEGK+TT +GL  AL   + K+    LRQ S GP FGIK       YSQ++P+ E  LHL GDIH
Sbjct:   16 IAAIAERLGLPVRYLEPYGRYRGKIDLTFLDDYHDRPLGRYVLVSAITPTPLGEGKTTTAIGLAMALNR-IGKRAAVTLRQSSLGPVFGIKGGGAGGGYSQIVPLVESILHLNGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CHLAA (Formate--tetrahydrofolate ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=fhs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.485e-22
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            I+ IA+ L L   + + YG+Y+ K+ L+ LD+      G YV+V  ITPTPLGEGK+TT +GL  AL   + K+    LRQ S GP FGIK       YSQ++P+ E  LHL GDIH
Sbjct:   16 IAAIAERLGLPVRYLEPYGRYRGKIDLTFLDDYHDRPLGRYVLVSAITPTPLGEGKTTTAIGLAMALNR-IGKRAAVTLRQSSLGPVFGIKGGGAGGGYSQIVPLVESILHLNGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STAAW (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain MW2) GN=fhs PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.939e-22
Identity = 72/228 (31.58%), Postives = 104/228 (45.61%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +D+DIAN      I +IA  + +  +  + YG YKAK+ ++ +   E    G  V+V  ++PTP GEGKST TVGL  A    L+K V+  LR+P+ GPTFGIK       Y+QV+PM++ NLH  GD                   FH  + ++ AL                                        I++   L ID   I W++V+D+NDR LR +
Sbjct:    5 SDLDIANQSTLQPIKDIAASVGISEDALEPYGHYKAKIDINKITPRENK--GKVVLVTAMSPTPAGEGKSTVTVGLADAFHE-LNKNVMVALREPALGPTFGIKGGATGGGYAQVLPMEDINLHFNGD-------------------FHAITTANNAL---------------------------------SAFIDNHIHQGNELGIDQRRIEWKRVLDMNDRALRHV 177          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STAAT (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=fhs PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.939e-22
Identity = 72/228 (31.58%), Postives = 104/228 (45.61%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +D+DIAN      I +IA  + +  +  + YG YKAK+ ++ +   E    G  V+V  ++PTP GEGKST TVGL  A    L+K V+  LR+P+ GPTFGIK       Y+QV+PM++ NLH  GD                   FH  + ++ AL                                        I++   L ID   I W++V+D+NDR LR +
Sbjct:    5 SDLDIANQSTLQPIKDIAASVGISEDALEPYGHYKAKIDINKITPRENK--GKVVLVTAMSPTPAGEGKSTVTVGLADAFHE-LNKNVMVALREPALGPTFGIKGGATGGGYAQVLPMEDINLHFNGD-------------------FHAITTANNAL---------------------------------SAFIDNHIHQGNELGIDQRRIEWKRVLDMNDRALRHV 177          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STAAS (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain MSSA476) GN=fhs PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.939e-22
Identity = 72/228 (31.58%), Postives = 104/228 (45.61%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +D+DIAN      I +IA  + +  +  + YG YKAK+ ++ +   E    G  V+V  ++PTP GEGKST TVGL  A    L+K V+  LR+P+ GPTFGIK       Y+QV+PM++ NLH  GD                   FH  + ++ AL                                        I++   L ID   I W++V+D+NDR LR +
Sbjct:    5 SDLDIANQSTLQPIKDIAASVGISEDALEPYGHYKAKIDINKITPRENK--GKVVLVTAMSPTPAGEGKSTVTVGLADAFHE-LNKNVMVALREPALGPTFGIKGGATGGGYAQVLPMEDINLHFNGD-------------------FHAITTANNAL---------------------------------SAFIDNHIHQGNELGIDQRRIEWKRVLDMNDRALRHV 177          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_STAES1.137e-2232.46Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]
FTHS_STAEQ1.137e-2232.46Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]
FTHS_METNO1.137e-2243.18Formate--tetrahydrofolate ligase OS=Methylobacteri... [more]
FTHS_HALWD1.137e-2241.04Formate--tetrahydrofolate ligase OS=Haloquadratum ... [more]
FTHS1_LACAC1.137e-2241.98Formate--tetrahydrofolate ligase 1 OS=Lactobacillu... [more]
FTHS_CHLSY1.485e-2247.01Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]
FTHS_CHLAA1.485e-2247.01Formate--tetrahydrofolate ligase OS=Chloroflexus a... [more]
FTHS_STAAW1.939e-2231.58Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]
FTHS_STAAT1.939e-2231.58Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]
FTHS_STAAS1.939e-2231.58Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
back to top