FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ACTP2 (Formate--tetrahydrofolate ligase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=fhs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.319e-22
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +D++IA +     I +IA++L L  +  + YGKYKAK+  +   +L    +G  ++V  I PTP GEGK+T T+GL  AL   L K  V   R+PS GP FG+K       Y+QV+PM++ NLH TGD H
Sbjct:    3 SDVEIAQAATMQPIHKIAEKLGLNADQIEQYGKYKAKINPTDAFKLPAK-NGKLILVTAINPTPAGEGKTTVTIGLTDALNQ-LGKNAVVAAREPSLGPVFGVKGGAAGGGYAQVLPMEDINLHFTGDFH 130          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_PEDPA (Formate--tetrahydrofolate ligase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=fhs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.641e-22
Identity = 58/129 (44.96%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+I+ + E L I  IA++        + YG YKAK+   +  E   +  G  V+V  I PTP GEGKST TVGL  AL       ++  LR+PSQGP  G+K       YSQVIPMD+ NLH TGD+H
Sbjct:    3 DIEISQNAEMLPIQTIAKQAGFDEKVVEPYGHYKAKI--DIFSEKPNTQLGKLVLVTSINPTPAGEGKSTVTVGLGDALNDLTGSAMIA-LREPSQGPVMGMKGGATGGGYSQVIPMDDINLHFTGDMH 128          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ANATD (Formate--tetrahydrofolate ligase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=fhs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.641e-22
Identity = 70/215 (32.56%), Postives = 96/215 (44.65%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            IS+IA+++ L  +  +LYGKYKAK+ L +L +     +G  ++V  I PTP GEGK+TT +GL  A+     K +VT LR+PS GP  G+K        SQ++P  + NLH TGDIH                I+H                   G R                                 L I+P SIT ++ MD+NDR LR I
Sbjct:   14 ISKIAEKIGLDEDEIELYGKYKAKISLDILKKKAQLQEGKVILVTSINPTPFGEGKTTTAIGLSMAINRLGFKSIVT-LREPSLGPFLGLKGGATGGGASQILPSIDINLHFTGDIHAVTSANNLLCAAVDNHIYH-------------------GNR---------------------------------LGINPKSITIKRAMDMNDRSLRHI 175          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_STAAB (Formate--tetrahydrofolate ligase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=fhs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.368e-22
Identity = 71/228 (31.14%), Postives = 103/228 (45.18%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +D+DIAN      I +IA  + +  +  + YG YKAK+ ++ +   +    G  V+V  ++PTP GEGKST TVGL  A    L K V+  LR+P+ GPTFGIK       Y+QV+PM++ NLH  GD                   FH  + ++ AL                                        I++   L ID   I W++V+D+NDR LR +
Sbjct:    5 SDLDIANQSTLQPIKDIAASVGISEDALEPYGHYKAKIDINKITPRDSK--GKVVLVTAMSPTPAGEGKSTVTVGLADAFHE-LKKNVMVALREPALGPTFGIKGGATGGGYAQVLPMEDINLHFNGD-------------------FHAITTANNAL---------------------------------SAFIDNHIHQGNELGIDQRRIEWKRVLDMNDRALRHV 177          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_RHOSK (Formate--tetrahydrofolate ligase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=fhs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.368e-22
Identity = 58/132 (43.94%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            V  DI+IA +     I EI   L +       YG  KAKV    +  LEG  DG  ++V  I PTP GEGK+TTTVGL   L   + KK V C+R+ S GP FG+K        +QV+PM++ NLH TGD H
Sbjct:    3 VQTDIEIARAARKKPIQEIGAGLGIPAEALIPYGHDKAKVGQGFIRGLEGRPDGKLILVTAINPTPAGEGKTTTTVGLGDGLNR-IGKKAVICIREASLGPNFGMKGGAAGGGRAQVVPMEDMNLHFTGDFH 133          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_RHOS4 (Formate--tetrahydrofolate ligase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=fhs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.368e-22
Identity = 58/132 (43.94%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            V  DI+IA +     I EI   L +       YG  KAKV    +  LEG  DG  ++V  I PTP GEGK+TTTVGL   L   + KK V C+R+ S GP FG+K        +QV+PM++ NLH TGD H
Sbjct:    3 VQTDIEIARAARKKPIQEIGAGLGIPAEALIPYGHDKAKVGQGFIRGLEGRPDGKLILVTAINPTPAGEGKTTTTVGLGDGLNR-IGKKAVICIREASLGPNFGMKGGAAGGGRAQVVPMEDMNLHFTGDFH 133          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_RHOS1 (Formate--tetrahydrofolate ligase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=fhs PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.368e-22
Identity = 58/132 (43.94%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            V  DI+IA +     I EI   L +       YG  KAKV    +  LEG  DG  ++V  I PTP GEGK+TTTVGL   L   + KK V C+R+ S GP FG+K        +QV+PM++ NLH TGD H
Sbjct:    3 VQTDIEIARAARKKPIQEIGAGLGIPAEALIPYGHDKAKVGQGFIRGLEGRPDGKLILVTAINPTPAGEGKTTTTVGLGDGLNR-IGKKAVICIREASLGPNFGMKGGAAGGGRAQVVPMEDMNLHFTGDFH 133          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_RHILW (Formate--tetrahydrofolate ligase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=fhs PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.623e-22
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            + +DI+IA +     I EI  +L +       YG  KAKV    +    G  DG  ++V  I PTP GEGK+TTTVGL   L   + KK + C+R+ S GP FG+K       ++QV+PM++ NLH TGD H
Sbjct:    4 IKSDIEIARAAAKKPIFEIGAKLGIPVEQLVPYGHDKAKVSAEFIAGQAGKKDGKLILVTAINPTPAGEGKTTTTVGLGDGLNR-IGKKAIVCIREASLGPCFGVKGGAAGGGFAQVVPMEDINLHFTGDFH 134          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_PORGI (Formate--tetrahydrofolate ligase OS=Porphyromonas gingivalis GN=fhs PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.623e-22
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI IA  +E   I +IA+ ++L     + YG+Y AKV LS +DE E    G  ++V  ITP   G GK+T ++GL   L   + KK +  LR+PS GP FG+K       Y+QV+PM+  NLH TGD H
Sbjct:    3 SDIQIARDIELQRIEQIAESIDLPVEQLEPYGRYTAKVPLSCIDE-EKVKKGNLILVTAITPNKAGVGKTTVSIGLALGLN-HIGKKAIVALREPSLGPCFGMKGGAAGGGYAQVLPMENINLHFTGDFH 130          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LEUCK (Formate--tetrahydrofolate ligase OS=Leuconostoc citreum (strain KM20) GN=fhs PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.623e-22
Identity = 62/129 (48.06%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI IA S E L I++IA++  LKPN    YG  KAK+ L      +    G  ++V  I PTP GEGKST TVGL  AL A   KK +  LR+PS GP  G+K        SQVIPM + NLH TGD H
Sbjct:    4 DIAIAQSAEILPITQIAEKAGLKPNEILPYGYDKAKIKLDPTISRKKDL-GKLILVTSINPTPAGEGKSTVTVGLADAL-ALAGKKTMIALREPSLGPVMGMKGGATGGGMSQVIPMADINLHFTGDFH 130          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_ACTP24.319e-2242.31Formate--tetrahydrofolate ligase OS=Actinobacillus... [more]
FTHS_PEDPA5.641e-2244.96Formate--tetrahydrofolate ligase OS=Pediococcus pe... [more]
FTHS_ANATD5.641e-2232.56Formate--tetrahydrofolate ligase OS=Anaerocellum t... [more]
FTHS_STAAB7.368e-2231.14Formate--tetrahydrofolate ligase OS=Staphylococcus... [more]
FTHS_RHOSK7.368e-2243.94Formate--tetrahydrofolate ligase OS=Rhodobacter sp... [more]
FTHS_RHOS47.368e-2243.94Formate--tetrahydrofolate ligase OS=Rhodobacter sp... [more]
FTHS_RHOS17.368e-2243.94Formate--tetrahydrofolate ligase OS=Rhodobacter sp... [more]
FTHS_RHILW9.623e-2240.91Formate--tetrahydrofolate ligase OS=Rhizobium legu... [more]
FTHS_PORGI9.623e-2242.31Formate--tetrahydrofolate ligase OS=Porphyromonas ... [more]
FTHS_LEUCK9.623e-2248.06Formate--tetrahydrofolate ligase OS=Leuconostoc ci... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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