FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEB8 (Formate--tetrahydrofolate ligase OS=Shewanella baltica (strain OS185) GN=fhs PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32
Identity = 84/227 (37.00%), Postives = 114/227 (50.22%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D++I++     +I+E+  +L L P    L+G  KAKV LSVL  L G   G  ++V  +TPTP GEGK+ T++GL Q+L A + +K   C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R+FHEA               + G++ F                       E  +  A L IDP  I W +V+D NDR LR+I
Sbjct:    4 DMNISSRASLKNITELGADLGLLPEEMMLFGHTKAKVELSVLQRLAGQRKGKLIIVTAVTPTPHGEGKTVTSIGLTQSLNA-IGQKACACIRQPSMGPVFGVKGGAAGGGYAQVVPMQEMNLHLTGDIHAVSSAHNLGAAAIAARLFHEA---------------RLGKKEF-----------------------EAQSGQAFLAIDPNEIRWHRVVDHNDRCLRQI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_MOOTH (Formate--tetrahydrofolate ligase OS=Moorella thermoacetica GN=fhs PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.854e-32
Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   75 VSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +S VP+DI+IA + +   + E+A+ L ++ +  +LYGKYKAK+ L V   L+   DG  ++V  ITPTP GEGK+TT+VGL  AL A L K+V+ CLR+PS GP+FGIK       Y+QV+PM++ NLH TGDIH
Sbjct:    1 MSKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIH 134          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_MOOTA (Formate--tetrahydrofolate ligase OS=Moorella thermoacetica (strain ATCC 39073) GN=fhs PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.854e-32
Identity = 68/135 (50.37%), Postives = 94/135 (69.63%), Query Frame = 3
Query:   75 VSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +S VP+DI+IA + +   + E+A+ L ++ +  +LYGKYKAK+ L V   L+   DG  ++V  ITPTP GEGK+TT+VGL  AL A L K+V+ CLR+PS GP+FGIK       Y+QV+PM++ NLH TGDIH
Sbjct:    1 MSKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIH 134          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEON (Formate--tetrahydrofolate ligase OS=Shewanella oneidensis GN=fhs PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.750e-31
Identity = 85/227 (37.44%), Postives = 110/227 (48.46%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D++I+       I+++  E  L P    L+G  KAKV L V   L G   G  ++V  +TPTP GEGK+ TT+GL Q+L A L  KV  C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R++HE  +  KA F R                     + G+S                 LDIDP  I W +V+D NDR LR+I
Sbjct:    4 DMEISRRAHLKDIAQLGAEFGLLPEEMQLFGNTKAKVDLQVQQRLAGQPKGKLIIVTAVTPTPHGEGKTVTTIGLTQSLKA-LGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSSAHNLGAAAIASRLYHE-MRLGKAEFER---------------------QSGLS----------------YLDIDPKGIRWHRVVDHNDRCLREI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBFM (Formate--tetrahydrofolate ligase OS=Vibrio fischeri (strain MJ11) GN=fhs PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.091e-31
Identity = 84/229 (36.68%), Postives = 108/229 (47.16%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            +DI+I  +     +  IA  L L  +     G +KAKV +  L  L+   +G  ++V  ITPTPLGEGK+ TT+GL Q L A L + V  C+RQPS GP FG+K       YSQV PM+E NLHLTGDIH               RI+HE                + G   FS                       E N+   L IDP  + W++VMD NDR LR +T
Sbjct:    3 SDIEICQTATLTRMKTIASNLGLHDDDITPQGPFKAKVNIDALKRLKSEPNGKLILVSAITPTPLGEGKTVTTIGLAQGL-AKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPMEELNLHLTGDIHAITAAHNLASAAIDARIYHE---------------QRLGYDVFS-----------------------EKNQLPALRIDPQRVVWKRVMDHNDRALRMVT 192          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_VIBF1 (Formate--tetrahydrofolate ligase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fhs PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31
Identity = 84/229 (36.68%), Postives = 107/229 (46.72%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            +DI+I  +     +  IA  L L  +     G +KAKV +  L  L+   +G  ++V  ITPTPLGEGK+ TT+GL Q L A L + V  C+RQPS GP FG+K       YSQV PM+E NLHLTGDIH               RI+HE                + G   FS                       E N    L IDP  + W++VMD NDR LR +T
Sbjct:    3 SDIEICQTATLTRMKTIASNLGLHDDDITPQGPFKAKVNIDALKRLKSEPNGKLILVSAITPTPLGEGKTVTTIGLAQGL-AKLGESVSACIRQPSMGPVFGVKGGAAGGGYSQVAPMEELNLHLTGDIHAITAAHNLASAAIDARIYHE---------------QRLGYDVFS-----------------------EKNELPALRIDPQHVVWKRVMDHNDRALRMVT 192          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THETN (Formate--tetrahydrofolate ligase OS=Thermoanaerobacter tengcongensis GN=fhs PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31
Identity = 66/130 (50.77%), Postives = 92/130 (70.77%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   + LHI ++A +L ++ ++ + YGKYKAK+  ++ D+++   DG  ++V  ITPTP GEGK+TTTVGL QAL A L KK +  LR+PS GP+FGIK       YSQV+PM++ NLH TGDIH
Sbjct:    3 SDIEIAQEAKMLHIRDVAAKLGIEEDYLEYYGKYKAKISPALWDKIKDRKDGKLILVTAITPTPAGEGKTTTTVGLGQAL-AKLGKKAMIALREPSLGPSFGIKGGAAGGGYSQVVPMEDINLHFTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEPW (Formate--tetrahydrofolate ligase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fhs PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30
Identity = 85/229 (37.12%), Postives = 114/229 (49.78%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLG-ISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DI+I+       I+EIA  L +  +   ++G  KAK+ LSV + L    D   V+V  +TPTP GEGK+ TTVGL QA+ A +  K   C+RQPS GP FGIK       Y+QV+PM+E NLHLTGDIH               R+FHE                                +LG I+ TK   L          ++IDP +I WR+V+D N+R LR+I
Sbjct:    3 SDINISRKHVCKPIAEIATNLGIVESELSVHGANKAKISLSVTNRLASKPDAKLVIVTAVTPTPYGEGKTVTTVGLTQAMNA-IGVKTCACIRQPSMGPVFGIKGGAAGGGYAQVVPMEELNLHLTGDIHAVSSAHNLAAAAIDARLFHET-------------------------------RLGAIAFTKESGLN--------AVNIDPENILWRRVVDHNERSLRQI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_PHOPR (Formate--tetrahydrofolate ligase OS=Photobacterium profundum GN=fhs PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.134e-30
Identity = 85/229 (37.12%), Postives = 112/229 (48.91%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            +DI I        I +IA    ++P      G  KAKV  S+L+ L    +G  V+V  ITPTPLGEGK+ TT+GL Q L A ++K+V+ C+RQPS GP FG+K       YSQV PM++ NLHLTGDIH               R++HE                + G  +FS+       K G+                  L ID  +I W++VMD NDR LR IT
Sbjct:    3 SDIQICRDTALTPIDQIALMAGIEPQDLTPQGTLKAKVKPSILNRLADKPEGKLVLVTAITPTPLGEGKTVTTIGLAQGL-AKINKRVIACIRQPSMGPVFGVKGGAAGGGYSQVAPMEKLNLHLTGDIHAVTAAHNLAAAALDARLYHE---------------ERHGYEAFSD-------KTGL----------------PALRIDIKNIVWKRVMDHNDRALRMIT 192          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SYNWW (Formate--tetrahydrofolate ligase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=fhs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.526e-30
Identity = 63/129 (48.84%), Postives = 86/129 (66.67%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            D++IA S +   I+EIA  + ++PN  +LYG YKAK+ L ++  +E    G  V+V  I+PTP GEGK+TTT+GL QAL   + KK +  LR+PS GP FGIK       Y+QV+PM++ NLH TGDIH
Sbjct:    4 DVEIAQSAKMQPITEIADRIGIEPNELELYGSYKAKISLDIMKRIEDKPQGKLVLVTAISPTPAGEGKTTTTIGLGQALNK-IGKKAIVALREPSLGPVFGIKGGATGGGYAQVVPMEDINLHFTGDIH 131          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_SHEB86.013e-3237.00Formate--tetrahydrofolate ligase OS=Shewanella bal... [more]
FTHS_MOOTH7.854e-3250.37Formate--tetrahydrofolate ligase OS=Moorella therm... [more]
FTHS_MOOTA7.854e-3250.37Formate--tetrahydrofolate ligase OS=Moorella therm... [more]
FTHS_SHEON1.750e-3137.44Formate--tetrahydrofolate ligase OS=Shewanella one... [more]
FTHS_VIBFM5.091e-3136.68Formate--tetrahydrofolate ligase OS=Vibrio fischer... [more]
FTHS_VIBF16.648e-3136.68Formate--tetrahydrofolate ligase OS=Vibrio fischer... [more]
FTHS_THETN6.648e-3150.77Formate--tetrahydrofolate ligase OS=Thermoanaeroba... [more]
FTHS_SHEPW1.134e-3037.12Formate--tetrahydrofolate ligase OS=Shewanella pie... [more]
FTHS_PHOPR1.134e-3037.12Formate--tetrahydrofolate ligase OS=Photobacterium... [more]
FTHS_SYNWW2.526e-3048.84Formate--tetrahydrofolate ligase OS=Syntrophomonas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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