FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SYNFM (Formate--tetrahydrofolate ligase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=fhs PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.438e-17
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  207 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKAL 563
            L +++ L+   DG Y+ V  ITPTPLGEGKSTT+VGL + LG      V  CLRQPS GPT  IK        + +IPM EF++ LTGDI+               R+ HE + +D+ L
Sbjct:   50 LKIMNRLKDKPDGKYIEVTAITPTPLGEGKSTTSVGLMEGLGK-RGVNVGGCLRQPSGGPTMNIKGTAAGGGNALLIPMTEFSMGLTGDINDIMNAHNLAMVALTARMQHERNYTDEQL 167          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THEAC (Formate--tetrahydrofolate ligase OS=Thermoplasma acidophilum GN=fhs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.878e-17
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGD 473
            I EI +E+ L  + Y+LYG+Y AK+ L + +   G      ++V  +TPTP GEGK+TTT+GL QA+   L K V   +R+PS GP FGIK        S+V P D  NL  TGD
Sbjct:    4 IEEIIKEIGLGRDDYELYGRYMAKLDLGLQNR--GRPRAKLILVTAMTPTPAGEGKTTTTIGLGQAMKK-LGKNVAIAIREPSLGPCFGIKGGATGGGKSKVEPSDRINLFFTGD 115          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CORDI (Formate--tetrahydrofolate ligase OS=Corynebacterium diphtheriae GN=fhs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.878e-17
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +P D++IA +     I++IA    +  +    YG  KAK+    ++ +     G  V+V GI+PTP GEGKST  +GL  A+       +V  +R+PS GP  GIK       YSQ++PM++ NLH TGD H
Sbjct:    1 MPTDVEIAQAHTLEPITDIANRAGVPSDALIPYGFTKAKI---DINRIASENTGKLVLVTGISPTPAGEGKSTVLIGLSDAMRLRGHNSIVA-IREPSLGPVMGIKGGAAGGGYSQIVPMEDINLHFTGDFH 128          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_HALMA (Formate--tetrahydrofolate ligase OS=Haloarcula marismortui GN=fhs PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.203e-17
Identity = 48/120 (40.00%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGY---YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            I E+ +   L  +    +G+Y AKV    ++ L   A+      V+V G+TPTP GEGK+ TTVGL Q L   + ++ +  +R+PS GP FG+K        SQV+PM++ NLH TGD+H
Sbjct:    4 IWELVEPWGLGLDDLQYFGEYTAKVKQHAIERLREQAENREQNLVLVTGMTPTPKGEGKTVTTVGLGQTLN-HVGEEAMIAIREPSLGPVFGVKGGAAGGGRSQVLPMEDINLHFTGDLH 122          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THET2 (Formate--tetrahydrofolate ligase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=fhs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.184e-17
Identity = 53/119 (44.54%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  123 LHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            L I E+A +L L  +   LYG + AKVL          A G  V+V  ITPTP GEGK+TT +GL  AL   L K+    LR+PS GP FG+K        ++V P  E NLH TGD H
Sbjct:    8 LPIEEVAAKLGLDRDRLYLYGPHMAKVLGE-----PPKAKGKLVLVTAITPTPAGEGKTTTAIGLVDALWR-LGKRAALALREPSLGPVFGVKGGATGGGKARVEPRHEINLHFTGDFH 120          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THEVO (Formate--tetrahydrofolate ligase OS=Thermoplasma volcanium GN=fhs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGD 473
            I EI  E+ L  + Y+LYG+Y AK+ L++ +  +  A    ++V  +TPT  GEGK+TTT+GL QA    L K V   +R+PS GP FGIK        S+V P D  NL  TGD
Sbjct:    4 IEEILHEMGLSKDDYELYGRYMAKLSLNLQEVNKKKAK--LILVTAMTPTAAGEGKTTTTIGLGQAFKK-LGKNVAIAIREPSLGPCFGIKGGATGGGKSKVEPSDRINLLFTGD 115          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_MYXXD (Formate--tetrahydrofolate ligase OS=Myxococcus xanthus (strain DK 1622) GN=fhs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            ++++  EL L P     +G ++AKV L  L +  G   G  V+V  I PTP GEGK+T +V L   L     ++ V  LR+PS GP FG+K        + + P  + NLH TGD+H
Sbjct:    6 MTDVGAELGLSPEDVLPWGTHRAKVSLDALGK-RGGRQGRLVLVSAINPTPPGEGKTTMSVALAMGLRK-RGRRAVAALREPSLGPVFGVKGGGTGGGQASLEPAADINLHFTGDLH 120          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_UREPA (Formate--tetrahydrofolate ligase OS=Ureaplasma parvum GN=fhs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.315e-14
Identity = 56/184 (30.43%), Postives = 80/184 (43.48%), Query Frame = 3
Query:  129 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEAS---QSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDL 671
            I E+  +  L  + Y+LYG   AK+    + +L    D   +V+  + P P GEGK+TT +GL  AL      K +  LR+PS GP FG+K        S + P D+ NLH +GD H                I + +S    S K L  R    N    R+    +  +  K G + T   DL
Sbjct:    5 IEEMINKKGLLIDDYELYGNEIAKI--KSIKKLN-KKDSKLIVITSMNPNPAGEGKTTTAIGLVDALNKH-GYKAIGALREPSMGPVFGMKGTGSGGGLSFLKPFDKINLHFSGDFHAITAANNLIVAVIENEIHNRSSMQIDSQKILIKRCLDVNDRSLRNIEYDINHQQTKSGFNITAASDL 184          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ACHLI (Formate--tetrahydrofolate ligase OS=Acholeplasma laidlawii (strain PG-8A) GN=fhs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.149e-13
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  138 IAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +  EL++  +    YGK K K+ LS+ + L+  A G  ++V  I PT  GEGK+T ++GL Q       K V+  LR+PS GP FG+K        S + P  + +LH  GDIH
Sbjct:    7 LIDELHILDDEIISYGKDKFKIELSLQERLKDKAPGKLILVTSINPTSSGEGKTTLSIGLAQGFKK-NGKDVMLALREPSMGPVFGMKGGATGGGVSILEPSLDIDLHFNGDIH 119          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_SYNFM1.438e-1742.86Formate--tetrahydrofolate ligase OS=Syntrophobacte... [more]
FTHS_THEAC1.878e-1744.35Formate--tetrahydrofolate ligase OS=Thermoplasma a... [more]
FTHS_CORDI1.878e-1737.88Formate--tetrahydrofolate ligase OS=Corynebacteriu... [more]
FTHS_HALMA3.203e-1740.00Formate--tetrahydrofolate ligase OS=Haloarcula mar... [more]
FTHS_THET24.184e-1744.54Formate--tetrahydrofolate ligase OS=Thermus thermo... [more]
FTHS_THEVO2.076e-1643.48Formate--tetrahydrofolate ligase OS=Thermoplasma v... [more]
FTHS_MYXXD1.139e-1437.61Formate--tetrahydrofolate ligase OS=Myxococcus xan... [more]
FTHS_UREPA3.315e-1430.43Formate--tetrahydrofolate ligase OS=Ureaplasma par... [more]
FTHS_ACHLI2.149e-1337.72Formate--tetrahydrofolate ligase OS=Acholeplasma l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
back to top