FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_METCA (Formate--tetrahydrofolate ligase OS=Methylococcus capsulatus GN=fhs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.526e-30
Identity = 83/229 (36.24%), Postives = 111/229 (48.47%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQE-LNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DI+IA   + L I ++A+E L +     D YG YKAKV L  +D L+   DG  ++V  I+PTP GEGK+TTTVGL  AL   + KK V CLR+PS GP FG+K       ++QV+PM++ NLH TGD H                                                     +G++      L    IN    LDIDP  I W++V+D+NDR LRKI
Sbjct:    2 SDIEIAQRAKMLPIIDLAREKLGIPAASLDPYGHYKAKVALDYIDGLKDRPDGKLILVTAISPTPAGEGKTTTTVGLGDALNR-IGKKTVMCLREPSLGPCFGVKGGAAGGGHAQVVPMEDINLHFTGDFH----------------------------------------------------AVGVAHNLLSALIDNHINHGNALDIDPRRIQWKRVVDMNDRALRKI 177          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHELP (Formate--tetrahydrofolate ligase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fhs PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.300e-30
Identity = 80/228 (35.09%), Postives = 111/228 (48.68%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKIT 776
            DI+I+       I  IA    + P+    YG+ KAKV L++ + ++ +  G  V+V  +TPTP GEGK+ T++GL Q L A + KK   C+RQPS GP FGIK        +QV+PM++ NLHLTGDIH               R++HE                               ++LG    +       E +  A LDIDP  I WR+V+D N+R LR IT
Sbjct:    4 DIEISRQASLQPIESIATAFGILPHELSPYGRTKAKVDLAITNRIKDNKHGKLVIVTAVTPTPFGEGKTVTSIGLTQGLQA-IGKKSCACIRQPSMGPVFGIKGGAAGGGLAQVVPMEDLNLHLTGDIHAVTSAHNLAAAAIDARLYHE-------------------------------QRLGCEAFR-------EQSGLAPLDIDPEKILWRRVVDQNERSLRTIT 192          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ROSCS (Formate--tetrahydrofolate ligase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=fhs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.628e-30
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +D+DIA +     I  +A +L L  +  +LYG+  AK+ L +L  L     G Y+VV  ITPTPLGEGK+TTT+GL QAL A L K+ V  +RQPS GPTFGIK       YSQV+PM++FNLHLTGDIH
Sbjct:    3 SDLDIAQAARLRPIRAVAADLGLTDDDIELYGRSIAKIDLGILQRLTDQPRGRYIVVTAITPTPLGEGKTTTTIGLGQAL-ARLGKRSVVTIRQPSMGPTFGIKGGAAGGGYSQVLPMEQFNLHLTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_BRAHW (Formate--tetrahydrofolate ligase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=fhs PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.628e-30
Identity = 65/129 (50.39%), Postives = 86/129 (66.67%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA   +   I +IA++LNL  + Y++YGKYKAK+ LS+L++L+   DG  V+V  ITPTP GEGKST T+GL Q L   + K  V  LR+PS GP FGIK       YSQ++PM++ NLH  GD H
Sbjct:    4 DIEIAQECKLERIEKIAEKLNLTDDDYEVYGKYKAKIELSLLNKLKDKKDGKLVLVTAITPTPAGEGKSTVTIGLTQGLNK-IGKNAVAALREPSLGPVFGIKGGACGGGYSQIVPMEDINLHFNGDFH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLONN (Formate--tetrahydrofolate ligase OS=Clostridium novyi (strain NT) GN=fhs PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA S     I++IA+EL L  +  +LYGKYK K+ L VL      ADG  ++V  I PTP GEGKST TVGL QAL   L KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    3 SDIEIAQSANMKKIADIAKELGLGEDDIELYGKYKCKISLDVLKNKHNEADGKLILVTAINPTPAGEGKSTITVGLGQAL-CKLHKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS1_STRSV (Formate--tetrahydrofolate ligase 1 OS=Streptococcus sanguinis (strain SK36) GN=fhs1 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 80/230 (34.78%), Postives = 111/230 (48.26%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +DI+IANSV+   I E+A++L +  +   LYG YKAK+    L+ L+   DG  ++V  I+PTP GEGK+TT+VGL  AL A + KK V  LR+PS GP FGIK       ++QV+PM++ NLH TGD H                                                     +G++      L    I+    L ID   ITW++ +D+NDR LR I
Sbjct:    2 VLSDIEIANSVQMKSIKEVAEKLGIAEDALSLYGNYKAKISAGQLEALKDKPDGKLILVTAISPTPAGEGKTTTSVGLVDALAA-IGKKAVIALREPSLGPVFGIKGGAAGGGHAQVVPMEDINLHFTGDFH----------------------------------------------------AIGVANNLLAALIDNHIHHGNALGIDSRRITWKRAVDMNDRQLRHI 178          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHESM (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain MR-4) GN=fhs PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.638e-29
Identity = 83/227 (36.56%), Postives = 106/227 (46.70%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D+DI+       I+ +  E  L P+   L+GK KAKV L V   L     G  ++V  +TPTP GEGK+ TT+GL Q+L A L  KV  C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R++HE ++  KA F      N                                      LDI P  I W +V+D NDR LR+I
Sbjct:    4 DMDISRRAPLKDIAVLGAEFGLLPDEMQLFGKTKAKVDLRVQQRLAEQQQGKLIIVTAVTPTPHGEGKTVTTIGLTQSLKA-LGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSNAHNLGAAAIASRLYHE-TRLGKAEFELQSGQN-------------------------------------YLDIAPNGIRWHRVVDHNDRCLREI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHESA (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain ANA-3) GN=fhs PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.139e-29
Identity = 82/227 (36.12%), Postives = 105/227 (46.26%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D+DI+       I+ +  E  L P+   L+GK KAKV L     L     G  ++V  +TPTP GEGK+ TT+GL Q+L A L  KV  C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R++HE ++  KA F      N                                      LDI P  I W +V+D NDR LR+I
Sbjct:    4 DMDISRRAHLKDIAALGAEFGLLPDEMQLFGKTKAKVDLRAQQRLAEQQQGKLIIVTAVTPTPHGEGKTVTTIGLTQSLKA-LGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSSAHNLGAAAIASRLYHE-TRLGKAEFESQSGQN-------------------------------------YLDIAPNGIRWHRVVDHNDRCLREI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEPA (Formate--tetrahydrofolate ligase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fhs PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.139e-29
Identity = 82/228 (35.96%), Postives = 109/228 (47.81%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DI+I+     L I++IA  L L+P+   L G  KAK+ LSV   L    +   V+V  +TPTP GEGK+ TT+GL QA+      K   C+RQPS GP FG K       Y+QV+PM+E NLHLTGDIH               R+FHE     +A                               T+   LT         L+ID  +I WR+V+D N+R LR+I
Sbjct:    3 SDIEISRQHTCLPITDIANNLGLEPDELSLCGANKAKISLSVAKRLADRENAKLVIVTAVTPTPFGEGKTVTTIGLTQAMN-LNGIKACACIRQPSMGPVFGTKGGAAGGGYAQVVPMEELNLHLTGDIHAVSSAHNLAAAAIDARLFHETRLGAEAF------------------------------TQESGLT--------ALNIDAENILWRRVVDHNERSLRQI 191          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOTE (Formate--tetrahydrofolate ligase OS=Clostridium tetani GN=fhs PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.139e-29
Identity = 78/230 (33.91%), Postives = 109/230 (47.39%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V  DI+IA   +   I EIA++  +  +  +LYGKYKAK+ L + D L+   DG  V+V  I+PTP GEGKSTT++GL QAL   + KK    LR+PS GP FG+K       Y+QV+PM++ NLH TGD+H                                                     +GI+           I++   L ID   I W++V+D+NDR LR +
Sbjct:    4 VLTDIEIAQKAQMKPIGEIAEKYGILEDELELYGKYKAKLSLDIFDRLKDEKDGKLVLVTAISPTPAGEGKSTTSIGLGQALNK-IGKKTFIALREPSLGPVFGVKGGAAGGGYAQVVPMEDINLHFTGDMH----------------------------------------------------AIGITNNLLSAAIDNHIHQGNALKIDSREIVWKRVVDMNDRALRNV 180          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_METCA2.526e-3036.24Formate--tetrahydrofolate ligase OS=Methylococcus ... [more]
FTHS_SHELP3.300e-3035.09Formate--tetrahydrofolate ligase OS=Shewanella loi... [more]
FTHS_ROSCS5.628e-3053.08Formate--tetrahydrofolate ligase OS=Roseiflexus ca... [more]
FTHS_BRAHW5.628e-3050.39Formate--tetrahydrofolate ligase OS=Brachyspira hy... [more]
FTHS_CLONN9.600e-3053.08Formate--tetrahydrofolate ligase OS=Clostridium no... [more]
FTHS1_STRSV9.600e-3034.78Formate--tetrahydrofolate ligase 1 OS=Streptococcu... [more]
FTHS_SHESM1.638e-2936.56Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]
FTHS_SHESA2.139e-2936.12Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]
FTHS_SHEPA2.139e-2935.96Formate--tetrahydrofolate ligase OS=Shewanella pea... [more]
FTHS_CLOTE2.139e-2933.91Formate--tetrahydrofolate ligase OS=Clostridium te... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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