FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOPH (Formate--tetrahydrofolate ligase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=fhs PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.139e-29
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA   + +HI E+A+ L +  +  D YGKYKAK    + DE++   DG  ++V  I PTP GEGK+TTTVGL QA G  L+K  V  LR+PS GP FGIK       Y+QV+PM++ NLH TGD H
Sbjct:    4 DIEIAQEAKMIHIREVAKSLGITEDDLDFYGKYKAKFTDELWDEIKDREDGKLILVTAINPTPAGEGKTTTTVGLGQAFGK-LEKNAVIALREPSLGPCFGIKGGAAGGGYAQVVPMEDLNLHFTGDFH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ROSS1 (Formate--tetrahydrofolate ligase OS=Roseiflexus sp. (strain RS-1) GN=fhs PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.648e-29
Identity = 69/130 (53.08%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +D+DIA +     I  +A +L L  +  + YG+  AK+ L+VL  L     G Y+VV  ITPTPLGEGK+TTT+GL QAL A L K+ V  +RQPS GPTFGIK       YSQV+PM+ FNLHLTGDIH
Sbjct:    3 SDLDIAQAARLRPIHAVAADLGLTDDDIERYGRNIAKIDLAVLQRLTDHPRGRYIVVTAITPTPLGEGKTTTTIGLGQAL-ARLGKRSVVTIRQPSMGPTFGIKGGAAGGGYSQVVPMEPFNLHLTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_ALKOO (Formate--tetrahydrofolate ligase OS=Alkaliphilus oremlandii (strain OhILAs) GN=fhs PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.648e-29
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            D+ IA   + L I++IA  L ++ +  +LYGKYKAKV L V D L+   DG  ++V  I PTP GEGK+TT VGL   L   + KK +T LR+PS GP FG+K       Y+QV+PM++ NLH TGDIH
Sbjct:    4 DVQIAQEAKMLPIADIAAGLGIQDDELELYGKYKAKVSLDVFDRLKDKPDGKLILVTAINPTPAGEGKTTTNVGLSMGLNK-IGKKTITALREPSLGPNFGVKGGAAGGGYAQVVPMEDINLHFTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THEPX (Formate--tetrahydrofolate ligase OS=Thermoanaerobacter sp. (strain X514) GN=fhs PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.765e-29
Identity = 62/130 (47.69%), Postives = 91/130 (70.00%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   + LHI E+A++L+++ ++ + YGKYKAK+  ++ ++++   DG  ++V  ITPTP GEGK+T TVGL QAL A + KK +  LR+PS GP  GIK       YSQV+PM++ NLH TGD+H
Sbjct:    3 SDIEIAQEAKMLHIREVAKKLDIEEDYLEYYGKYKAKISPALSEKIKDRKDGKLILVTAITPTPAGEGKTTLTVGLGQAL-AKIGKKAMIALREPSLGPCMGIKGGAAGGGYSQVVPMEDINLHFTGDLH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THEP3 (Formate--tetrahydrofolate ligase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=fhs PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.765e-29
Identity = 62/130 (47.69%), Postives = 91/130 (70.00%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   + LHI E+A++L+++ ++ + YGKYKAK+  ++ ++++   DG  ++V  ITPTP GEGK+T TVGL QAL A + KK +  LR+PS GP  GIK       YSQV+PM++ NLH TGD+H
Sbjct:    3 SDIEIAQEAKMLHIREVAKKLDIEEDYLEYYGKYKAKISPALSEKIKDRKDGKLILVTAITPTPAGEGKTTLTVGLGQAL-AKIGKKAMIALREPSLGPCMGIKGGAAGGGYSQVVPMEDINLHFTGDLH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHESR (Formate--tetrahydrofolate ligase OS=Shewanella sp. (strain MR-7) GN=fhs PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29
Identity = 83/227 (36.56%), Postives = 107/227 (47.14%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            D+DI+   +   I+ +  E  L P+   L+GK KAKV L V   L     G  ++V  +TPTP GEGK+ TT+GL Q+L A L  KV  C+RQPS GP FG+K       Y+QV+PM E NLHLTGDIH               R++HE ++  KA F      N                                      LDI P  I W +V+D NDR LR+I
Sbjct:    4 DMDISRRADLKDIAALGAEFGLLPDEMQLFGKTKAKVDLRVQQRL-AEQQGKLIIVTAVTPTPHGEGKTVTTIGLTQSLKA-LGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSSAHNLGAAAIASRLYHE-TRLGKAEFELQSGQN-------------------------------------YLDIAPNGIRWHRVVDHNDRCLREI 190          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBB (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=fhs PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA   E LHI  +A++L L   + + YGKYK KV L V ++++ + DG  V+V  I PTP GEGKST TVGL  AL   + K  V  LR+PS GP FGIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIEIAQEAEMLHIKNVAEKLGLDEENIEYYGKYKCKVSLDVYNKVKNNRDGKLVLVTAINPTPAGEGKSTVTVGLGDALNK-MGKNTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOAC (Formate--tetrahydrofolate ligase OS=Clostridium acidi-urici GN=fhs PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.223e-29
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI IA   +  HI ++A+ +++  +  +LYGKYKAKV L VLD+L+   DG  V+V  I PTP GEGK+TT +GL   L   L KK  T LR+PS GP+FG+K       Y+QV+PM + NLH TGD H
Sbjct:    4 DIQIAQEAQMKHIKDVAELIDIHEDDLELYGKYKAKVSLDVLDQLKDKPDGKLVLVTAINPTPAGEGKTTTNIGLSMGLNK-LGKKTSTALREPSLGPSFGVKGGAAGGGYAQVVPMADINLHFTGDFH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS2_STRPF (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=fhs2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.127e-29
Identity = 81/230 (35.22%), Postives = 110/230 (47.83%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +DI+IANSV    IS++A +L +      LYGKYKAK+    L  L+   DG  ++V  I+PTP GEGK+TT+VGL  AL A + KK V  LR+PS GP FG+K       ++QV+PM++ NLH TGD H                                                     +G++      L    I+    L ID   ITW++V+D+NDR LR I
Sbjct:    2 VLSDIEIANSVSMEPISKVADQLGIDKEALCLYGKYKAKINARQLVALKDKPDGKLILVTAISPTPAGEGKTTTSVGLVDALSA-IGKKAVIALREPSLGPVFGVKGGAAGGGHAQVVPMEDINLHFTGDFH----------------------------------------------------AIGVANNLLAALIDNHIHHGNSLGIDSRRITWKRVVDMNDRQLRHI 178          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_SHEHH (Formate--tetrahydrofolate ligase OS=Shewanella halifaxensis (strain HAW-EB4) GN=fhs PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.061e-28
Identity = 82/228 (35.96%), Postives = 113/228 (49.56%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DI+I+     L I+EIA++L L P+ +   G  KAKV  SV   L    +   V+V  +TPTP GEGK+ TT+GL QA+      K   C+RQPS GP FG K       Y+QV+PM+E NLHLTGDIH               R+FHE               ++ G   F+       ++ G+S                 L+ID  +I WR+V+D N+R LR+I
Sbjct:    3 SDIEISRQHTCLPITEIAKDLGLNPDEFSPCGVNKAKVSQSVARRLADKKNAKLVIVTAVTPTPFGEGKTVTTIGLTQAMN-LNGIKTCACIRQPSMGPVFGTKGGAAGGGYAQVVPMEELNLHLTGDIHAVSSAHNLAAAAIDARLFHE---------------HRLGAEVFA-------QESGLS----------------ALNIDSENILWRRVVDHNERSLRQI 191          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_CLOPH2.139e-2949.61Formate--tetrahydrofolate ligase OS=Clostridium ph... [more]
FTHS_ROSS13.648e-2953.08Formate--tetrahydrofolate ligase OS=Roseiflexus sp... [more]
FTHS_ALKOO3.648e-2948.84Formate--tetrahydrofolate ligase OS=Alkaliphilus o... [more]
FTHS_THEPX4.765e-2947.69Formate--tetrahydrofolate ligase OS=Thermoanaeroba... [more]
FTHS_THEP34.765e-2947.69Formate--tetrahydrofolate ligase OS=Thermoanaeroba... [more]
FTHS_SHESR6.223e-2936.56Formate--tetrahydrofolate ligase OS=Shewanella sp.... [more]
FTHS_CLOBB6.223e-2949.61Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOAC6.223e-2948.84Formate--tetrahydrofolate ligase OS=Clostridium ac... [more]
FTHS2_STRPF8.127e-2935.22Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS_SHEHH1.061e-2835.96Formate--tetrahydrofolate ligase OS=Shewanella hal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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