FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS2_STRP8 (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M18 GN=fhs2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.386e-28
Identity = 81/230 (35.22%), Postives = 110/230 (47.83%), Query Frame = 3 
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +DI+IANSV    IS++A +L +      LYGKYKAK+    L  L+   DG  ++V  I+PTP GEGK+TT+VGL  AL A + KK V  LR+PS GP FG+K       ++QV+PM++ NLH TGD H                                                     +G++      L    I+    L ID   ITW++V+D+NDR LR I
Sbjct:    2 VLSDIEIANSVTMEPISKVANQLGIDEEALCLYGKYKAKIDARQLVALKDKPDGKLILVTAISPTPAGEGKTTTSVGLVDALSA-IGKKAVIALREPSLGPVFGVKGGAAGGGHAQVVPMEDINLHFTGDFH----------------------------------------------------AIGVANNLLAALIDNHIHHGNSLGIDSRRITWKRVVDMNDRQLRHI 178
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS2_STRP6 (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M6 GN=fhs2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.386e-28
Identity = 81/230 (35.22%), Postives = 110/230 (47.83%), Query Frame = 3 
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +DI+IANSV    IS++A +L +      LYGKYKAK+    L  L+   DG  ++V  I+PTP GEGK+TT+VGL  AL A + KK V  LR+PS GP FG+K       ++QV+PM++ NLH TGD H                                                     +G++      L    I+    L ID   ITW++V+D+NDR LR I
Sbjct:    2 VLSDIEIANSVTMEPISKVADQLGIDKETLCLYGKYKAKIDARQLVALKDKPDGKLILVTAISPTPAGEGKTTTSVGLVDALSA-IGKKAVIALREPSLGPVFGVKGGAAGGGHAQVVPMEDINLHFTGDFH----------------------------------------------------AIGVANNLLAALIDNHIHHGNSLGIDSRRITWKRVVDMNDRQLRHI 178
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS2_STRP3 (Formate--tetrahydrofolate ligase 2 OS=Streptococcus pyogenes serotype M3 GN=fhs2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.386e-28
Identity = 81/230 (35.22%), Postives = 110/230 (47.83%), Query Frame = 3 
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +DI+IANSV    IS++A +L +      LYGKYKAK+    L  L+   DG  ++V  I+PTP GEGK+TT+VGL  AL A + KK V  LR+PS GP FG+K       ++QV+PM++ NLH TGD H                                                     +G++      L    I+    L ID   ITW++V+D+NDR LR I
Sbjct:    2 VLSDIEIANSVTMEPISKVANQLGIDEEALCLYGKYKAKIDARQLVALKDKPDGKLILVTAISPTPAGEGKTTTSVGLVDALSA-IGKKAVIALREPSLGPVFGVKGGAAGGGHAQVVPMEDINLHFTGDFH----------------------------------------------------AIGVANNLLAALIDNHIHHGNSLGIDSRRITWKRVVDMNDRQLRHI 178
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_EUBE2 (Formate--tetrahydrofolate ligase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=fhs PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.811e-28
Identity = 79/227 (34.80%), Postives = 103/227 (45.37%), Query Frame = 3 
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            DI+IA       I  +A    +  +  +LYGKYKAK+    ++ ++G+ DG  ++V  I PTP GEGK+T TVGL +A G  L KK V  LR+PS GP FGIK       Y+QV+PM+E NLH TGD H                             N LC                              L    I +   L IDP  +TW++ MD+NDR LR I
Sbjct:    4 DIEIAQEAVMEPIKNVAARCGISEDDLELYGKYKAKISDEYINSVKGNEDGKLILVTAINPTPAGEGKTTITVGLGEAFGK-LGKKAVIALREPSLGPCFGIKGGAAGGGYAQVVPMEELNLHFTGDFHAITSA------------------------NNLCAA----------------------------LLDNHIQQGNELGIDPRCVTWKRCMDMNDRVLRNI 177
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOPS (Formate--tetrahydrofolate ligase OS=Clostridium perfringens (strain SM101 / Type A) GN=fhs PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.811e-28
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 3 
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA S +   I  IA+++ L+ +  +LYGKYK K+ L V+  LE + DG  V+V  I PTP GEGKST TVGL QAL   + K  V  LR+PS GP FGIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIEIAQSAKMEPIINIAKKIGLEEDDIELYGKYKCKISLDVIKRLENNKDGKLVLVTAINPTPAGEGKSTVTVGLGQALNK-IGKNTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMH 131
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LISW6 (Formate--tetrahydrofolate ligase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=fhs PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.365e-28
Identity = 84/230 (36.52%), Postives = 113/230 (49.13%), Query Frame = 3 
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +DI+IA+  E L ++ IA+ L L  +  +LYGKYKAK+    +  L+    G  V+V  I PTP GEGKST TVGL  AL    DKK V  LR+PS GPT GIK       Y+QVIPM++ NLH TGD                   FH  + ++ AL             +F +   ++  +LG                     ID   I W++V+D+NDR LRK+
Sbjct:    5 VKSDIEIASKAEILPVTTIAKHLGLDADALELYGKYKAKLSYDTIHSLKDQEPGKLVLVTAINPTPAGEGKSTVTVGLGDALSK-KDKKTVIALREPSLGPTMGIKGGATGGGYAQVIPMEDINLHFTGD-------------------FHAITAANNAL------------SAFIDNHMQQGNELG---------------------IDGRRIVWKRVVDLNDRALRKV 181
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_NATTJ (Formate--tetrahydrofolate ligase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=fhs PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.088e-28
Identity = 64/130 (49.23%), Postives = 81/130 (62.31%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA       I +IA E+ +K    +LYG YKAK+       L+   DG  ++V  ITPTP GEGKSTTTVGL QAL   L K  +  LR+PS GP+FG+K       YSQV+PM++ NLH TGDIH
Sbjct:    3 SDIEIARGAPMRPIKDIASEVGIKDEELELYGDYKAKITFDAWKRLKDKPDGNLILVTAITPTPAGEGKSTTTVGLGQALKR-LGKNTMVALREPSLGPSFGVKGGAAGGGYSQVVPMEDINLHFTGDIH 131
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBL (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=fhs PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.088e-28
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +  +I  IA+++ L     DLYGKYK K+ L VL+  +   DG  ++V  I PTP GEGKST TVGL QAL    +KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 SDIEIAQESKMKNIKNIAEKIGLTEEDIDLYGKYKCKISLDVLESNKDKKDGKLILVTAINPTPAGEGKSTVTVGLGQALWK-KNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 132
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBK (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Okra / Type B1) GN=fhs PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.088e-28
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +  +I  IA+++ L     DLYGKYK K+ L VL+  +   DG  ++V  I PTP GEGKST TVGL QAL    +KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 SDIEIAQESKMKNIKNIAEKIGLTEEDIDLYGKYKCKISLDVLESNKDKKDGKLILVTAINPTPAGEGKSTVTVGLGQALWK-KNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 132
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LISIN (Formate--tetrahydrofolate ligase OS=Listeria innocua GN=fhs PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.033e-28
Identity = 84/230 (36.52%), Postives = 112/230 (48.70%), Query Frame = 3 
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            V +DI+IA+  E L ++ IA+ L L  +  +LYGKYKAK+    +  L+    G  V+V  I PTP GEGKST TVGL  AL    DKK V  LR+PS GPT GIK       Y+QVIPM++ NLH TGD                   FH  + ++ AL             +F +   ++   LG                     ID   I W++V+D+NDR LRK+
Sbjct:    5 VKSDIEIASVAEILPVTTIAEHLGLDADALELYGKYKAKLSYDTIHSLKDKEQGKLVLVTAINPTPAGEGKSTVTVGLGDALSK-KDKKTVIALREPSLGPTMGIKGGATGGGYAQVIPMEDINLHFTGD-------------------FHAITAANNAL------------SAFIDNHMQQGNDLG---------------------IDGRRIVWKRVVDLNDRALRKV 181
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS2_STRP81.386e-2835.22Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS2_STRP61.386e-2835.22Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS2_STRP31.386e-2835.22Formate--tetrahydrofolate ligase 2 OS=Streptococcu... [more]
FTHS_EUBE21.811e-2834.80Formate--tetrahydrofolate ligase OS=Eubacterium el... [more]
FTHS_CLOPS1.811e-2850.39Formate--tetrahydrofolate ligase OS=Clostridium pe... [more]
FTHS_LISW62.365e-2836.52Formate--tetrahydrofolate ligase OS=Listeria welsh... [more]
FTHS_NATTJ3.088e-2849.23Formate--tetrahydrofolate ligase OS=Natranaerobius... [more]
FTHS_CLOBL3.088e-2850.00Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOBK3.088e-2850.00Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_LISIN4.033e-2836.52Formate--tetrahydrofolate ligase OS=Listeria innoc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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