FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_EUBAC (Formate--tetrahydrofolate ligase OS=Eubacterium acidaminophilum GN=fhs PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.268e-28
Identity = 62/129 (48.06%), Postives = 80/129 (62.02%), Query Frame = 3 
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            D+ IA   + L I E+A+++ L  +  +LYGKYKAK+ L V   L    DG  V+V  I PTP GEGK+TT VGL   L   + KK +T L +PS GP FG+K       Y+QV+PMD+ NLH TGDIH
Sbjct:    4 DVQIAQEAKMLPIMEVAKQIGLGEDDIELYGKYKAKISLDVYKRLADKPDGKLVLVTAINPTPAGEGKTTTNVGLSMGLNK-IGKKTITALNEPSLGPCFGVKGGAAGGGYAQVVPMDDINLHFTGDIH 131
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBM (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.268e-28
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +  +I +IA+ + L     DLYGKYK K+ L VL   +   DG  ++V  I PTP GEGKST TVGL QAL    +KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 SDIEIAQESKMKNIKDIAENIGLTEEDIDLYGKYKCKISLDVLKNNKDKKDGKLILVTAINPTPAGEGKSTVTVGLGQALWK-KNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 132
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LACLS (Formate--tetrahydrofolate ligase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.880e-28
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 3 
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA + E   I++IA+++ L  +  +LYGKYKAK+ L VL++ +   DG  V+V  I PTP GEGKST TVGL  A  A  DK V+  LR+PS GP  GIK       ++QV+PM++ NLH TGDIH
Sbjct:    4 DIEIAQAAEIQPITKIAEKIGLSFDDIELYGKYKAKIPLEVLEKFDEQTDGKLVLVTSINPTPAGEGKSTVTVGLADAF-ARQDKNVMVALREPSLGPVMGIKGGAAGGGFAQVLPMEDINLHFTGDIH 131
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBJ (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.880e-28
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +  +I  IA+++ L     DLYGKYK K+ L VL   +   DG  ++V  I PTP GEGKST TVGL QAL    +KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 SDIEIAQESKMKNIKNIAEKIGLTEEDIDLYGKYKCKISLDVLKSNKDKKDGKLILVTAINPTPAGEGKSTVTVGLGQALWK-KNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 132
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOBH (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.880e-28
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +  +I  IA+++ L     DLYGKYK K+ L VL   +   DG  ++V  I PTP GEGKST TVGL QAL    +KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 SDIEIAQESKMKNIKNIAEKIGLTEEDIDLYGKYKCKISLDVLKRNKDKKDGKLILVTAINPTPAGEGKSTVTVGLGQALWK-KNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 132
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOB6 (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.880e-28
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +  +I  IA+++ L     DLYGKYK K+ L VL   +   DG  ++V  I PTP GEGKST TVGL QAL    +KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 SDIEIAQESKMKNIKNIAEKIGLTEEDIDLYGKYKCKISLDVLKSNKDKKDGKLILVTAINPTPAGEGKSTVTVGLGQALWK-KNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 132
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOB1 (Formate--tetrahydrofolate ligase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.880e-28
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +  +I  IA+++ L     DLYGKYK K+ L VL   +   DG  ++V  I PTP GEGKST TVGL QAL    +KK V  LR+PS GP FGIK       YSQV+PM++ NLH TGD+H
Sbjct:    4 SDIEIAQESKMKNIKNIAEKIGLTEEDIDLYGKYKCKISLDVLKRNKDKKDGKLILVTAINPTPAGEGKSTVTVGLGQALWK-KNKKAVIALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDMH 132
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CARHZ (Formate--tetrahydrofolate ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.880e-28
Identity = 63/130 (48.46%), Postives = 85/130 (65.38%), Query Frame = 3 
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +DI+IA   +   I +IA++L L  +  +LYGKYKAK+   V D ++   DG  ++V  I PTP GEGK+TTTVGL  AL   L KK V  LR+PS GP+FG+K       Y+QV+PM++ NLH TGD+H
Sbjct:    3 SDIEIAQEAKLEPIVKIAEKLGLTEDDIELYGKYKAKIAAHVWDRIKDRPDGKLILVTAINPTPAGEGKTTTTVGLGDALSR-LGKKTVIALREPSLGPSFGVKGGAAGGGYAQVVPMEDINLHFTGDLH 131
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOPE (Formate--tetrahydrofolate ligase OS=Clostridium perfringens GN=fhs PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.986e-28
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 3 
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA S +   I  IA+++ L  +  +LYGKYK K+ L  + +LE + DG  V+V  I PTP GEGKST TVGL QAL   + K  V  LR+PS GP FGIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIEIAQSAKMEPIINIAKKIGLGEDDIELYGKYKCKISLDAIKKLENNKDGKLVLVTAINPTPAGEGKSTVTVGLGQALNK-IGKNTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMH 131
[Close]
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOP1 (Formate--tetrahydrofolate ligase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=fhs PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.986e-28
Identity = 64/129 (49.61%), Postives = 83/129 (64.34%), Query Frame = 3 
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA S +   I  IA+++ L  +  +LYGKYK K+ L  + +LE + DG  V+V  I PTP GEGKST TVGL QAL   + K  V  LR+PS GP FGIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIEIAQSAKMEPIINIAKKIGLGEDDIELYGKYKCKISLDAIKKLENNKDGKLVLVTAINPTPAGEGKSTVTVGLGQALNK-IGKNTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMH 131
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_EUBAC5.268e-2848.06Formate--tetrahydrofolate ligase OS=Eubacterium ac... [more]
FTHS_CLOBM5.268e-2850.00Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_LACLS6.880e-2849.61Formate--tetrahydrofolate ligase OS=Lactococcus la... [more]
FTHS_CLOBJ6.880e-2850.00Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOBH6.880e-2850.00Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOB66.880e-2850.00Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CLOB16.880e-2850.00Formate--tetrahydrofolate ligase OS=Clostridium bo... [more]
FTHS_CARHZ6.880e-2848.46Formate--tetrahydrofolate ligase OS=Carboxydotherm... [more]
FTHS_CLOPE8.986e-2849.61Formate--tetrahydrofolate ligase OS=Clostridium pe... [more]
FTHS_CLOP18.986e-2849.61Formate--tetrahydrofolate ligase OS=Clostridium pe... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
back to top