FC924887

Overview
NameFC924887
Unique NameFC924887
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4326 contig Ccv1_Contig4326:257..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LISMO (Formate--tetrahydrofolate ligase OS=Listeria monocytogenes GN=fhs PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 66/132 (50.00%), Postives = 82/132 (62.12%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            V +DI+IA+  E L ++ IA+ L L  +  +LYGKYKAK+    +  L+    G  V+V  I PTP GEGKST TVGL  AL    DKK V  LR+PS GPT GIK       Y+QVIPM++ NLH TGD H
Sbjct:    5 VKSDIEIASKAEILPVTTIAEHLGLDADALELYGKYKAKLSYDTIHSLKDKEPGKLVLVTAINPTPAGEGKSTVTVGLGDALSK-KDKKTVIALREPSLGPTMGIKGGATGGGYAQVIPMEDINLHFTGDFH 135          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LISMH (Formate--tetrahydrofolate ligase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=fhs PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 66/132 (50.00%), Postives = 82/132 (62.12%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            V +DI+IA+  E L ++ IA+ L L  +  +LYGKYKAK+    +  L+    G  V+V  I PTP GEGKST TVGL  AL    DKK V  LR+PS GPT GIK       Y+QVIPM++ NLH TGD H
Sbjct:    5 VKSDIEIASKAEILPVTTIAEHLGLDADALELYGKYKAKLSYDTIHSLKDKETGKLVLVTAINPTPAGEGKSTVTVGLGDALSK-KDKKTVIALREPSLGPTMGIKGGATGGGYAQVIPMEDINLHFTGDFH 135          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LISMF (Formate--tetrahydrofolate ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=fhs PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 66/132 (50.00%), Postives = 82/132 (62.12%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            V +DI+IA+  E L ++ IA+ L L  +  +LYGKYKAK+    +  L+    G  V+V  I PTP GEGKST TVGL  AL    DKK V  LR+PS GPT GIK       Y+QVIPM++ NLH TGD H
Sbjct:    5 VKSDIEIASKAEILPVTTIAEHLGLDADALELYGKYKAKLSYDTIHSLKDKEPGKLVLVTAINPTPAGEGKSTVTVGLGDALSK-KDKKTVIALREPSLGPTMGIKGGATGGGYAQVIPMEDINLHFTGDFH 135          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LISMC (Formate--tetrahydrofolate ligase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=fhs PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 66/132 (50.00%), Postives = 82/132 (62.12%), Query Frame = 3
Query:   84 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            V +DI+IA+  E L ++ IA+ L L  +  +LYGKYKAK+    +  L+    G  V+V  I PTP GEGKST TVGL  AL    DKK V  LR+PS GPT GIK       Y+QVIPM++ NLH TGD H
Sbjct:    5 VKSDIEIASKAEILPVTTIAEHLGLDADALELYGKYKAKLSYDTIHSLKDKEPGKLVLVTAINPTPAGEGKSTVTVGLGDALSK-KDKKTVIALREPSLGPTMGIKGGATGGGYAQVIPMEDINLHFTGDFH 135          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_LACLM (Formate--tetrahydrofolate ligase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=fhs PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA + E   I++IA+++ L  +  +LYGKYKAK+ L VL++ +   DG  V+V  I PTP GEGKST TVGL  A  A  DK V+  LR+PS GP  GIK       ++QV+PM++ NLH TGDIH
Sbjct:    4 DIEIAQAAEIQPITKIAEKIGLSFDDIELYGKYKAKIPLEVLEKFDEQNDGKLVLVTSINPTPAGEGKSTVTVGLADAF-ARQDKNVMVALREPSLGPVMGIKGGAAGGGFAQVLPMEDINLHFTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_BACCQ (Formate--tetrahydrofolate ligase OS=Bacillus cereus (strain Q1) GN=fhs PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   66 LQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +   + V +DI+IA       I EIA ELN+  +  + YG YK K+ L +   L+   DG  V+V  I PTP GEGKST TVGL QA    + KK V  LR+PS GPT G+K       +SQV+PM++ NLH TGDIH
Sbjct:    1 MTTTTTVKSDIEIAQEASMKKIQEIAAELNILEDELEPYGHYKGKLSLDIFKRLQNEKDGKVVLVTAINPTPAGEGKSTVTVGLGQAFNK-IGKKTVIALREPSLGPTMGLKGGAAGGGFSQVVPMEDINLHFTGDIH 137          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_BACC7 (Formate--tetrahydrofolate ligase OS=Bacillus cereus (strain AH187) GN=fhs PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 64/138 (46.38%), Postives = 82/138 (59.42%), Query Frame = 3
Query:   66 LQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            +   + V +DI+IA       I EIA ELN+  +  + YG YK K+ L +   L+   DG  V+V  I PTP GEGKST TVGL QA    + KK V  LR+PS GPT G+K       +SQV+PM++ NLH TGDIH
Sbjct:    1 MTTTTTVKSDIEIAQEASMKKIQEIAAELNILEDELEPYGHYKGKLSLDIFKRLQNEEDGKVVLVTAINPTPAGEGKSTVTVGLGQAFNK-IGKKTVIALREPSLGPTMGLKGGAAGGGFSQVVPMEDINLHFTGDIH 137          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOD6 (Formate--tetrahydrofolate ligase OS=Clostridium difficile (strain 630) GN=fhs PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.002e-27
Identity = 77/228 (33.77%), Postives = 107/228 (46.93%), Query Frame = 3
Query:   90 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRKVMDVNDRFLRKI 773
            +DI+IA   +P  I E+A++L L  +  +LYGKYKAKV  ++L    G      ++   I PTP GEGK+TTT+G+  A  A LDK V+  LR+PS GP FG+K       Y+QV+PM++ NLH TGD H                                                     +G +      +    I++   L IDP  ITWR+ +D+NDR LR I
Sbjct:    5 SDIEIAQEAKPQDIREVAKKLGLGEDDVELYGKYKAKVDYNLLKRETGKK-AKLILTTAINPTPAGEGKTTTTIGVADAF-AKLDKNVLVALREPSLGPVFGVKGGAAGGGYAQVVPMEDINLHFTGDFH----------------------------------------------------AIGAANNLLAAMLDNHIHQGNALRIDPKKITWRRCVDMNDRQLRNI 178          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_THEM4 (Formate--tetrahydrofolate ligase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=fhs PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.614e-27
Identity = 63/129 (48.84%), Postives = 82/129 (63.57%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA   +   IS+IA+++ ++  + + YGKY AKV L  L  L    DG  ++V  ITPTP GEGK+TT++GL  AL   L KK +  LR+PS GP FGIK       YSQV+PM+  NLH TGDIH
Sbjct:    4 DIEIAREAKLKRISDIAKDIGIEEKYLEPYGKYIAKVDLKFLKTLNNKKDGKLILVTAITPTPAGEGKTTTSIGLSMALNR-LGKKSIVTLREPSLGPVFGIKGGAAGGGYSQVLPMENINLHFTGDIH 131          
BLAST of FC924887 vs. ExPASy Swiss-Prot
Match: FTHS_CLOAB (Formate--tetrahydrofolate ligase OS=Clostridium acetobutylicum GN=fhs PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.614e-27
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 3
Query:   93 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 479
            DI+IA   +   I +IA+++ L  +  DLYGKYK K+ L VL + +   DG  V+V  I PTP GEGKST TVGL +AL   ++K  V  LR+PS GP FGIK       Y+QV+PM++ NLH TGD+H
Sbjct:    4 DIEIAQEAKMEPIVKIAEKIGLNEDDIDLYGKYKCKISLDVLKQNKNKQDGKLVLVTAINPTPAGEGKSTVTVGLGEAL-CKMNKNTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDMH 131          
The following BLAST results are available for this feature:
BLAST of FC924887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
FTHS_LISMO1.174e-2750.00Formate--tetrahydrofolate ligase OS=Listeria monoc... [more]
FTHS_LISMH1.174e-2750.00Formate--tetrahydrofolate ligase OS=Listeria monoc... [more]
FTHS_LISMF1.174e-2750.00Formate--tetrahydrofolate ligase OS=Listeria monoc... [more]
FTHS_LISMC1.174e-2750.00Formate--tetrahydrofolate ligase OS=Listeria monoc... [more]
FTHS_LACLM1.174e-2749.61Formate--tetrahydrofolate ligase OS=Lactococcus la... [more]
FTHS_BACCQ1.174e-2746.38Formate--tetrahydrofolate ligase OS=Bacillus cereu... [more]
FTHS_BACC71.174e-2746.38Formate--tetrahydrofolate ligase OS=Bacillus cereu... [more]
FTHS_CLOD62.002e-2733.77Formate--tetrahydrofolate ligase OS=Clostridium di... [more]
FTHS_THEM42.614e-2748.84Formate--tetrahydrofolate ligase OS=Thermosipho me... [more]
FTHS_CLOAB2.614e-2748.84Formate--tetrahydrofolate ligase OS=Clostridium ac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL04FM1 TF Citrus clementina cDNA clone KN0AAP1YL04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924887 ID=FC924887; Name=FC924887; organism=Citrus clementina; type=EST; length=778bp
CAAAACTAAAATTGATTTATAAAAAAAAAAAATAATTAATGGCTTCATCA
AAAACAGTGAGAAAATTACAGGTGGTATCACCAGTACCAGCAGATATAGA
CATTGCAAACTCAGTGGAGCCACTTCATATTTCTGAGATTGCCCAAGAAC
TCAACCTCAAGCCAAACCATTATGATCTCTATGGCAAATACAAAGCCAAG
GTGTTGCTATCTGTTCTTGACGAGCTTGAAGGATCTGCAGATGGGTATTA
TGTGGTGGTTGGAGGGATTACTCCAACTCCTCTTGGAGAGGGCAAGTCTA
CTACAACTGTTGGGCTGTGTCAAGCATTGGGTGCTTTTCTTGATAAAAAG
GTTGTTACATGTCTTCGTCAACCCTCACAAGGACCAACCTTTGGAATCAA
AGGAGGTGCAGCCGGTGGTGGTTACAGTCAAGTGATCCCAATGGATGAGT
TCAATCTTCATTTAACAGGAGATATTCATGCAATTACAGCTGCAAACAAT
CTTCTTGCTGCTGCCATTGACACCAGGATATTCCATGAGGCGAGCCAATC
CGATAAGGCTTTATTTAACAGGTTATGCCCACCGAACAAAGAAGGAGAAC
GGAGCTTTAGTAACATCATGTTTAGGCGTCTGAAGAAACTTGGTATCTCC
AAAACCAAGCCCGAGGATCTTACGCCAGAAGAAATTAACAGATTTGCTAG
GCTTGATATCGACCCAGCTTCTATTACATGGAGGAAAGTTATGGATGTGA
ATGACCGATTCTTGAGGAAAATTACTAT
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