FC924902

Overview
NameFC924902
Unique NameFC924902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.820e-23
Identity = 63/194 (32.47%), Postives = 100/194 (51.55%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V +T     I  G+G+Q  I+ R  Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVAL+ A+ +L  L   N  + +G+++   A++ PL  I   AG + SVV   +     +  Y+     Y D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKLSSLVGDNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRAGEGNYGYNAATGVYDDMIEMGILD-PTKVTRSALQFAAS 509

HSP 2 Score: 22.3274 bits (46), Expect = 4.820e-23
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.820e-23
Identity = 63/194 (32.47%), Postives = 100/194 (51.55%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V +T     I  G+G+Q  I+ R  Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEG++ GGGVAL+ A+ +L  L   N  + +G+++   A++ PL  I   AG + SVV   +     +  Y+     Y D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGQAKRVSITKENSTIIDGAGDQAAIQGRVAQIRQQIEEATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKLSSLVGDNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRAGEGNYGYNAATGVYGDMIEMGILD-PTKVTRSALQFAAS 509

HSP 2 Score: 22.3274 bits (46), Expect = 4.820e-23
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIAILTG
Sbjct:  286 KAMLQDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PASMU (60 kDa chaperonin OS=Pasteurella multocida GN=groL PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.837e-23
Identity = 63/194 (32.47%), Postives = 102/194 (52.58%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V +  +   I  G G++  I+ R  Q+   IE STSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+ GGGVAL+ A+ ++  L   N  + +G+KL   A++ PL  I + AG + S+V   +     +  Y+   ++Y D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGQAKRVVINKDNTTIIDGIGDEAQIQGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAASKVAGLQGDNEEQNVGIKLALRAMEAPLRQIVANAGEEASIVASAVKNGEGNFGYNAGTEQYGDMIEMGILD-PTKVTRSALQFAAS 509
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_POLNA (60 kDa chaperonin 2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=groL2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.270e-23
Identity = 66/194 (34.02%), Postives = 99/194 (51.03%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V     II  GSG    IE R +Q+   IE +TSDY+ + L+ER+  L+  VA++KVG AT  E                  +EEGI+ GGGVALL A +    +   N  +  G+KL+  A++ PL  I   AG + SVV   +     +  ++   D Y D ++  I+D P K+ +  L +A S
Sbjct:  317 LGQAKRIEVGKENTIIIDGSGEAADIEARVKQVRVQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALLRAKQTAGVIKGDNADQDAGIKLVLRAIEAPLREIVYNAGGEASVVVNAVLAGTGNYGFNAANDTYGDMIEMGILD-PTKVTRTALQNAAS 509

HSP 2 Score: 21.557 bits (44), Expect = 6.270e-23
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA++ DIA+LTG
Sbjct:  286 KAMLEDIAVLTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PSEPF (60 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf0-1) GN=groL PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.270e-23
Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V ++    II  G+GN   I+ R  Q+   +  ++SDY+ + L+ERL  LS  VA++KVG  +  E                  +EEG++PGGGVAL+ A   +  L   N  + +G+ +L+ AV+ PL  IA+ +G + SVV   +     +  Y+    EY D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGSAKRVTLSKENTIIVDGAGNDGDIQARIAQIRAQVAETSSDYDREKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRALNAIINLKGDNADQDVGIAVLRRAVEAPLRQIAANSGDEPSVVVNEVKNGKGNFGYNAATGEYGDMIEMGILD-PTKVTRSALQAASS 509

HSP 2 Score: 21.9422 bits (45), Expect = 6.270e-23
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_PSEFS (60 kDa chaperonin OS=Pseudomonas fluorescens (strain SBW25) GN=groL PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.270e-23
Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LGS K+V ++    II  G+G +  I+ R  Q+   +  ++SDY+ + L+ERL  LS  VA++KVG  +  E                  +EEG++PGGGVAL+ A E L  L   N  + +G+ +L+ AV+ PL  IA+ +G + SVV   +     +  Y+     Y D ++  I+D P K+ ++ L  A S
Sbjct:  317 LGSAKRVTISKENTIIVDGAGVEQDIQARITQIRAQVAETSSDYDREKLQERLAKLSGGVAVIKVGAGSEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALIRALEALTNLTGDNADQNVGIAVLRRAVEAPLRQIAANSGDEPSVVVNEVKNGKGNYGYNAATGVYGDMIEMGILD-PTKVTRSALQAAAS 509

HSP 2 Score: 21.9422 bits (45), Expect = 6.270e-23
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA+++DIA+LTG
Sbjct:  286 KAMLQDIAVLTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_POLNS (60 kDa chaperonin OS=Polynucleobacter necessarius (strain STIR1) GN=groL PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.271e-23
Identity = 65/194 (33.51%), Postives = 100/194 (51.55%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+++V     II  G+G+   IE R + +   +E +TSDY+ + L+ER+  L+  VA+++VG AT  E                  +EEGIIPGGGVAL+ A + ++ L   N  +  G+ ++  A++ PL TI S AG    VV   +     +  Y+    EY D V   ++D P K+ K  L +A S
Sbjct:  317 LGQAKRLEVGKENTIIIDGAGDAKAIEARVKNIRVQVEEATSDYDKEKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVDDALHATRAAVEEGIIPGGGVALIRAMQGIKGLKGDNADQDAGISIVLRAMQEPLRTIVSNAGEDAGVVVNAVQASKGNNGYNAATGEYGDLVAQGVID-PTKVTKAALVNAAS 509

HSP 2 Score: 21.9422 bits (45), Expect = 6.271e-23
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.271e-23
Identity = 67/195 (34.36%), Postives = 105/195 (53.85%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVS-VVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  K+V V  +   I  G+G +  IE R + +   IE +TSDY+ + L+ERL  L   VA++ VG AT  E                  +EEGI+PGGGVA L   + LE +  +N GEK+G+ +++ A++ PL  I+   G++ S VV K+   +     ++    EY D VK+ ++D P K+ ++ L +A S
Sbjct:  317 LGRAKRVTVDKDNTTIVDGAGKKEDIEARVKTIRAQIEETTSDYDREKLQERLAKLVGGVAVINVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVAYLRCVKALEGV-KVNEGEKVGLDIVRRAIEEPLRQISGNGGYEGSIVVNKVKEAKEAAFGFNAATGEYEDLVKAGVID-PTKVSRSALQNAAS 509

HSP 2 Score: 21.9422 bits (45), Expect = 6.271e-23
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  286 KAMLEDIAILTG 297
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.271e-23
Identity = 64/195 (32.82%), Postives = 108/195 (55.38%), Query Frame = 3 
Query:  162 MLGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEKLPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            MLG   KV VT  +  I  G+G+   I++R +Q+   IE + SD++ + L+ERL  L+  VA++KVG AT  E                  +EEG++ GGG  L+ A   L++L  +   E  GV +++ A++ P+  IA  AG++ SV+ + +  E+  + +D    E+V+ ++S IVD P K+ ++ L +A S
Sbjct:  315 MLGRAHKVTVTKEDTTIVEGAGDSKEIQNRIKQIRTQIENTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGLVAGGGTTLIDAIPALDEL-NLEGDEATGVDIVRKALEAPVRLIADNAGYEGSVIVEKVKSEDKGIGFDAYNGEFVNMIESGIVD-PAKVTRSALQNAAS 507

HSP 2 Score: 22.3274 bits (46), Expect = 6.271e-23
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 2 
Query:   59 NCELV----YEENCKAIMRDIAILTG 124
            NC  V    + +  KA++ DIAILTG
Sbjct:  271 NCVAVKAPGFGDRRKAMLEDIAILTG 296
[Close]
BLAST of FC924902 vs. ExPASy Swiss-Prot
Match: CH60_CLOTH (60 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groL PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 6.272e-23
Identity = 63/195 (32.31%), Postives = 108/195 (55.38%), Query Frame = 3 
Query:  165 LGSCKKVKVTNNEMIIHGGSGNQVYIEDRCEQLSDAIEMSTSDYEIKLLEERLQMLSSRVAILKVGGATTAESXXXXXXXXXXXXXXXXXMEEGIIPGGGVALLHASEELEK-LPAMNIGEKIGVKLLQHAVKMPLYTIASTAGFQVSVVEKLLGQENPDLEYDPPRDEYVDAVKSAIVDPPLKLIKNELDDAVS 746
            LG  ++VKV     II  G+G+   I+ R   +   IE +TSD++ + L+ERL  L+  VA+++VG AT  E                  +EEGI+ GGG AL++   ++ K L  ++  EK GV+++  A++ P+  IA  AG + SV+ + +    P + +D   ++YV+ +++ IVD P K+ ++ L +A S
Sbjct:  315 LGRARQVKVQKENTIIVDGAGDPKEIQKRIASIKSQIEETTSDFDREKLQERLAKLAGGVAVIQVGAATETEMKEKKLRIEDALAATKAAVEEGIVAGGGTALVNVIPKVAKVLDTVSGDEKTGVQIILRALEEPVRQIAENAGLEGSVIVEKVKASEPGIGFDAYNEKYVNMIEAGIVD-PAKVTRSALQNAAS 508

HSP 2 Score: 21.9422 bits (45), Expect = 6.272e-23
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:   89 KAIMRDIAILTG 124
            KA++ DIAILTG
Sbjct:  284 KAMLEDIAILTG 295
The following BLAST results are available for this feature:
BLAST of FC924902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_VIBC34.820e-2332.4760 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH601_VIBCH4.820e-2332.4760 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH60_PASMU4.837e-2332.4760 kDa chaperonin OS=Pasteurella multocida GN=groL... [more]
CH602_POLNA6.270e-2334.0260 kDa chaperonin 2 OS=Polaromonas naphthalenivora... [more]
CH60_PSEPF6.270e-2332.9960 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_PSEFS6.270e-2332.9960 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_POLNS6.271e-2333.5160 kDa chaperonin OS=Polynucleobacter necessarius ... [more]
CH602_ANADE6.271e-2334.3660 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH60_HALOH6.271e-2332.8260 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_CLOTH6.272e-2332.3160 kDa chaperonin OS=Clostridium thermocellum (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL12FM1 TF Citrus clementina cDNA clone KN0AAP1YL12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924902 ID=FC924902; Name=FC924902; organism=Citrus clementina; type=EST; length=750bp
GCTTTGTTTTGTCAAACCTCCTGTATTTGAAGAAAGTTGGAAGGCAGTCT
ATGGAGAAAATTGCGAATTGGTTTATGAAGAAAATTGCAAAGCAATCATG
CGGGACATTGCCATTCTCACAGGTCGTAACTGCAGCATCTAATTCTCTGT
ACATTCCGCTAATGCTTGGTTCTTGCAAAAAGGTTAAAGTGACAAATAAT
GAGATGATTATCCATGGTGGGTCTGGTAACCAAGTATACATTGAAGACAG
ATGTGAACAGTTGAGCGACGCAATTGAAATGAGCACTTCAGATTATGAAA
TTAAGTTATTAGAAGAGAGGCTTCAAATGCTTTCTTCAAGAGTTGCTATT
CTCAAGGTTGGTGGAGCTACCACCGCAGAATCGCGCAAAAAGAGAAAAAG
AGCTACTAATGCCCTAAATGCTGCGAAGGCTGCAATGGAGGAAGGAATCA
TACCTGGTGGTGGGGTTGCACTTCTGCATGCTTCAGAGGAGCTAGAAAAA
CTGCCAGCTATGAACATCGGCGAAAAAATTGGTGTTAAGCTCTTACAGCA
TGCTGTTAAGATGCCTTTGTACACAATTGCTTCCACTGCCGGCTTTCAAG
TTTCAGTTGTCGAAAAGCTACTAGGGCAAGAGAATCCCGACCTTGAATAT
GATCCCCCGAGAGATGAATATGTAGATGCAGTTAAGTCTGCAATCGTTGA
TCCACCGCTGAAACTAATAAAGAATGAATTAGATGATGCTGTCAGTTACT
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