FC924903

Overview
NameFC924903
Unique NameFC924903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.849e-71
Identity = 130/146 (89.04%), Postives = 138/146 (94.52%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG    FNVKNV+VKDLK G VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  292 PGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.509e-70
Identity = 130/146 (89.04%), Postives = 138/146 (94.52%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.509e-70
Identity = 130/146 (89.04%), Postives = 138/146 (94.52%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSV+KK+P+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGA 437          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.736e-70
Identity = 129/146 (88.36%), Postives = 137/146 (93.84%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNV+VKDLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK V+KKDP+GA
Sbjct:  292 PGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTGA 437          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.015e-58
Identity = 107/145 (73.79%), Postives = 128/145 (88.28%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG VAS+SK+DPAK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRR+GK LE  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVG+IKSVDK D SG
Sbjct:  302 PGDNVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 2.953e-58
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG V  N+K+DP K A++FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KFAEI +KIDRRSGKELEK PK +K+GDA  V+M+P KPM VE F++Y PLGRFAVRDMRQTVAVG+IK+V KKD SG
Sbjct:  292 PGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.578e-58
Identity = 106/145 (73.10%), Postives = 127/145 (87.59%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG V S+SK+DPAK A +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRRSGK+LE  PKF+K+GD+  VKMIP+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  302 PGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.500e-57
Identity = 105/145 (72.41%), Postives = 124/145 (85.52%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFN+KNVSVK+++RGYVA +SK+DP K A++F +QVII+NHPGQI  GYAPVLDCHT+HIA KF E++ KIDRRSGK+LE  PKF+K+GDA  VK+IP KPMVVE FS YPPLGRFAVRDMRQTVAVGVIK+VD K+ SG
Sbjct:  304 PGDNVGFNIKNVSVKEIRRGYVAGDSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 7.273e-57
Identity = 103/140 (73.57%), Postives = 123/140 (87.86%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 422
            PG   GFNVKNVSVKD++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  303 PGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 9.499e-57
Identity = 102/145 (70.34%), Postives = 123/145 (84.83%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG VA +SK+DP KG  +F +QVI++NHPGQIG GYAPVLDCHT+HIA KF  ++ KIDRR+GK++E  PKF+K+GDA  VKM+P+KPM VE F+EYPPLGRFAVRDMRQTVAVGVIKSV+K D +G
Sbjct:  303 PGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          
The following BLAST results are available for this feature:
BLAST of FC924903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_PEA8.849e-7189.04Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A2_HORVU1.509e-7089.04Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU1.509e-7089.04Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_WHEAT5.736e-7088.36Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_SCHCO1.015e-5873.79Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_TRYBB2.953e-5874.48Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ABSGL6.578e-5873.10Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_ORYLA2.500e-5772.41Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_NEUCR7.273e-5773.57Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_YARLI9.499e-5770.34Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM24FM1 TF Citrus clementina cDNA clone KN0AAP6YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924903 ID=FC924903; Name=FC924903; organism=Citrus clementina; type=EST; length=590bp
TTCCTGGTGCTTATGAGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGAT
CTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGGG
GGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAGA
TTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGCT
GTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGA
GCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTTA
AGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCCC
CCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCGCTGTTGG
AGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCCAAGGTAACCA
AGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTTGTCTGCAAGT
AATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTTTTAGGCATAA
ATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
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