FC924903

Overview
NameFC924903
Unique NameFC924903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.893e-13
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 3 
Query:   48 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVG-VIKSVD 419
            D++ GYV +++K+ P    + F +Q+ I+  P  +  GY+ V+  HT+   V FA++L K+D+ + K  +K P F   G     ++    P+ +E F +Y  +GRF +RD   TVAVG V+K +D
Sbjct:  540 DVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
The following BLAST results are available for this feature:
BLAST of FC924903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
ERF3_SCHPO2.893e-1334.40Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM24FM1 TF Citrus clementina cDNA clone KN0AAP6YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924903 ID=FC924903; Name=FC924903; organism=Citrus clementina; type=EST; length=590bp
TTCCTGGTGCTTATGAGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGAT
CTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGGG
GGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAGA
TTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGCT
GTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGA
GCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTTA
AGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCCC
CCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCGCTGTTGG
AGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCCAAGGTAACCA
AGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTTGTCTGCAAGT
AATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTTTTAGGCATAA
ATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
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