FC924903

Overview
NameFC924903
Unique NameFC924903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 9.499e-57
Identity = 103/140 (73.57%), Postives = 123/140 (87.86%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 422
            PG   GFNVKNVSVKD++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+VDK
Sbjct:  303 PGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.620e-56
Identity = 102/145 (70.34%), Postives = 127/145 (87.59%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG VAS+SK+DPAK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDMRQTVAVGVIKSV+K +  G
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.620e-56
Identity = 106/141 (75.18%), Postives = 121/141 (85.82%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKN+SVKD++RG VA +SK+DP   A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE +PKFLK+GDA  V+MIP KPM VETFS+YPPLGRFAVRDMRQTVAVGVIK VDKK
Sbjct:  304 PGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.116e-56
Identity = 100/145 (68.97%), Postives = 124/145 (85.52%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVK+++RG VA +SK+DP KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E+L KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K + +G
Sbjct:  303 PGDNVGFNVKNVSVKEVRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELLEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSEKTG 447          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.764e-56
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RGYVASN+K+DPAK A++FT+QVII+NHPGQIGNGYAPVLDCHT HIA KFA I TKIDRRSGKELE EPKF+K+GDA  V M P KPM VE+F++YPPLG  +  DMRQTVAVGVIKSV+KK+ +G
Sbjct:  292 PGDNVGFNVKNVSVKDIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.764e-56
Identity = 101/146 (69.18%), Postives = 123/146 (84.25%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNVSVK+++RG VA +SK+DP KG  +F +QVI++NHPGQ+G GYAPVLDCHT+HIA KF+E++ KIDRR+GK +E  PKF+K+GDA  VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D  GA
Sbjct:  301 PGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKGCDSFNAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFSELVEKIDRRTGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVAKSDKQGA 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.764e-56
Identity = 101/145 (69.66%), Postives = 127/145 (87.59%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG V S+SK+DPAK +++FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+E++ KIDRRSGK++E  PKF+K+GD+  VKM+P+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  302 PGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.764e-56
Identity = 101/145 (69.66%), Postives = 127/145 (87.59%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG V S+SK+DPAK +++FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+E++ KIDRRSGK++E  PKF+K+GD+  VKM+P+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  302 PGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.764e-56
Identity = 102/145 (70.34%), Postives = 123/145 (84.83%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVK+L+RGYVA +SK +P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRRSGK  E+ PKF+K+GDA  V ++P+KP+ VE F E+PPLGRFAVRDMRQTVAVGVIK+V+ KD SG
Sbjct:  304 PGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASG 448          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.609e-56
Identity = 102/146 (69.86%), Postives = 124/146 (84.93%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNVSVK+++RG VA +SK+DP  GA++FT+QVI+MNHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK  E  PKF+K+GD+  VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK+V+K   + A
Sbjct:  303 PGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPMGAASFTAQVIVMNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKATESAPKFIKSGDSAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVEKSSAAAA 448          
The following BLAST results are available for this feature:
BLAST of FC924903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_SORMA9.499e-5773.57Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PIRIN1.620e-5670.34Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A3_XENLA1.620e-5675.18Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_COCIM2.116e-5668.97Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_EUGGR2.764e-5674.48Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_AURPU2.764e-5669.18Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A2_RHIRA2.764e-5669.66Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA2.764e-5669.66Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_DROME2.764e-5670.34Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_TRIRE3.609e-5669.86Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM24FM1 TF Citrus clementina cDNA clone KN0AAP6YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924903 ID=FC924903; Name=FC924903; organism=Citrus clementina; type=EST; length=590bp
TTCCTGGTGCTTATGAGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGAT
CTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGGG
GGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAGA
TTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGCT
GTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGA
GCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTTA
AGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCCC
CCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCGCTGTTGG
AGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCCAAGGTAACCA
AGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTTGTCTGCAAGT
AATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTTTTAGGCATAA
ATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
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