FC924903

Overview
NameFC924903
Unique NameFC924903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.587e-54
Identity = 102/145 (70.34%), Postives = 119/145 (82.07%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVK+L+RGYVA +SK +P KGA NFT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRRSGK  E  PK +K+GDA  V + P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIKSV  KD +G
Sbjct:  253 PGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKDATG 397          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.587e-54
Identity = 99/145 (68.28%), Postives = 123/145 (84.83%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD+KRG+VAS+SK+DPAK A++F +QVI+++HPGQI  GY+PV+DCHT+HIA KFA +  ++DRRSGK LE +PKF+K GDA  +KM P+KPM VE+F EYPPLGRFAVRDM+QTVAVGVIK V+KK+  G
Sbjct:  189 PGDNVGFNVKNVSVKDVKRGHVASDSKNDPAKAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKEAGG 333          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.587e-54
Identity = 98/145 (67.59%), Postives = 122/145 (84.14%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK+V+ K+  G
Sbjct:  304 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGG 448          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.587e-54
Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPS 434
            PG   GFN KNVSVKD++RG V S+SK+DPAK + +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KFAE+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE F++Y PLGRFAVRDMRQTVAVGVIK V K D S
Sbjct:  304 PGDNVGFNEKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGS 447          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.378e-54
Identity = 99/146 (67.81%), Postives = 122/146 (83.56%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNVSVKD++RG V  +SK+DP  G ++FT+QVII+NHPGQI  GY+PVLDCHT+HIA KFAE++ KIDRRSGK++E+ PKF+K+GDA   KM+P+KPM VE F++Y PLGRFAVRDMRQTVAVGVIK+V+K  P  A
Sbjct:  302 PGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAA 447          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 3.378e-54
Identity = 99/146 (67.81%), Postives = 122/146 (83.56%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 440
            PG   GFNVKNVSVKD++RG V  +SK+DP  G ++FT+QVII+NHPGQI  GY+PVLDCHT+HIA KFAE++ KIDRRSGK++E+ PKF+K+GDA   KM+P+KPM VE F++Y PLGRFAVRDMRQTVAVGVIK+V+K  P  A
Sbjct:  302 PGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAA 447          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.763e-54
Identity = 100/145 (68.97%), Postives = 118/145 (81.38%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKN+SVK+L+RGYVA +SK+ P +GA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K DRR+GK  E+ PK +K+GDA  V + PTKPM VE F E+PPLGRFAVRDMRQTVAVGVIKSV  KD  G
Sbjct:  304 PGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDTQG 448          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.763e-54
Identity = 103/141 (73.05%), Postives = 118/141 (83.69%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GF VKNVSVKD++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCH +HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+VDKK
Sbjct:  304 PGDNVGFKVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHMAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.763e-54
Identity = 101/141 (71.63%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.763e-54
Identity = 101/141 (71.63%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
The following BLAST results are available for this feature:
BLAST of FC924903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_RHYAM2.587e-5470.34Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_EIMBO2.587e-5468.28Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_BOMMO2.587e-5467.59Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A4_OSCTI2.587e-5470.14Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A2_SCHPO3.378e-5467.81Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A1_SCHPO3.378e-5467.81Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_APIME5.763e-5468.97Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A3_HUMAN5.763e-5473.05Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A2_RABIT5.763e-5471.63Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_HUMAN5.763e-5471.63Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM24FM1 TF Citrus clementina cDNA clone KN0AAP6YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924903 ID=FC924903; Name=FC924903; organism=Citrus clementina; type=EST; length=590bp
TTCCTGGTGCTTATGAGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGAT
CTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGGG
GGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAGA
TTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGCT
GTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGA
GCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTTA
AGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCCC
CCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCGCTGTTGG
AGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCCAAGGTAACCA
AGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTTGTCTGCAAGT
AATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTTTTAGGCATAA
ATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
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