FC924903

Overview
NameFC924903
Unique NameFC924903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.763e-54
Identity = 101/141 (71.63%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.526e-54
Identity = 100/145 (68.97%), Postives = 125/145 (86.21%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVSVKD++RG V S+SK+DPAK +++FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+E++ KIDRRS K +E  PKF+K+GD+  VKM+P+KPM VE +++YPPLGRFAVRDMRQTVAVGVIK+V+K D +G
Sbjct:  302 PGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSEK-MEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 445          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.830e-54
Identity = 101/141 (71.63%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.830e-54
Identity = 101/141 (71.63%), Postives = 119/141 (84.40%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 425
            PG   GFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  304 PGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.190e-53
Identity = 98/142 (69.01%), Postives = 118/142 (83.10%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 428
            PG   GFNVKNVSVK+++RG V  ++K+DP KG ++F + VI++NHPGQI  GY+PVLDCHT+HIA +F E+L K DRRSGK+LE  PKFLK+GDA  VK +P+KPM VE FSEYPPLGRFAVRDMRQTVAVGVIKSVDK +
Sbjct:  302 PGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 2.860e-53
Identity = 96/145 (66.21%), Postives = 120/145 (82.76%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 437
            PG   GFNVKNVS+KD++RG V  +SK+DP   A++F +QVI++NHPGQIG GY PVLDCHT+HIA KFAE++ KIDRR+GK +E  PKF+K+GDA  VK++  KP+ VET+++YPPLGRFAVRDMRQTVAVGVIKSVDK +  G
Sbjct:  302 PGDNVGFNVKNVSIKDIRRGNVCGDSKNDPPMEAASFNAQVIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 3.735e-53
Identity = 96/142 (67.61%), Postives = 121/142 (85.21%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 428
            PG   GFNVKNVSVK+L+RGYVA +SK++P +GA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI  K DRR+GK  E EPK +K+GDA  + ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIKSV+ K+
Sbjct:  304 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.371e-53
Identity = 95/142 (66.90%), Postives = 120/142 (84.51%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 428
            PG   GFNVKNVS+KD+KRG+VAS++K+DPAKG  +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  I  K+D+RSGK LE+ PK +K+GDA  V M P KP+ VE F++YPPLGRFAVRDM+QTVAVGVIKSV KK+
Sbjct:  288 PGDNVGFNVKNVSIKDIKRGFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 8.321e-53
Identity = 99/140 (70.71%), Postives = 119/140 (85.00%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 422
            PG   GFNVKNVS+KD++RG VAS+SK+DPA  A++F +QVII+NHPG+I  GY PVLDCHT+HIA KFAE+L KIDRRSGK +E EPK +K+GDA  + +IP+K M VE+FS+YPPLGRFAVRDMRQTVAVGVIK VDK
Sbjct:  306 PGDNVGFNVKNVSIKDIRRGMVASDSKNDPAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of FC924903 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.419e-52
Identity = 98/142 (69.01%), Postives = 118/142 (83.10%), Query Frame = 3
Query:    3 PGAYEGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 428
            PG   GFNVKNVSVKD++RG V  ++K DP K A++F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  +  KIDRR+GK LE+ PKF+K+GDA  VKM+P+K M VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D
Sbjct:  301 PGDNVGFNVKNVSVKDIRRGNVCGDTKCDPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
The following BLAST results are available for this feature:
BLAST of FC924903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A2_BOVIN5.763e-5471.63Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A3_RHIRA7.526e-5468.97Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A2_RAT9.830e-5471.63Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE9.830e-5471.63Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A_YEAST2.190e-5369.01Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_CRYNE2.860e-5366.21Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A2_DROME3.735e-5367.61Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_CRYPV6.371e-5366.90Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_HYDAT8.321e-5370.71Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_PUCGR1.419e-5269.01Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM24FM1 TF Citrus clementina cDNA clone KN0AAP6YM24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924903 ID=FC924903; Name=FC924903; organism=Citrus clementina; type=EST; length=590bp
TTCCTGGTGCTTATGAGGGGTTCAACGTTAAGAATGTTTCAGTGAAGGAT
CTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAAGGG
GGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCCAGA
TTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATAGCT
GTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAAGGA
GCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTGTTA
AGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATATCCC
CCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCGTCGCTGTTGG
AGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCCAAGGTAACCA
AGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTTGTCTGCAAGT
AATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTTTTAGGCATAA
ATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
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