FC924987

Overview
NameFC924987
Unique NameFC924987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.257e-67
Identity = 116/200 (58.00%), Postives = 152/200 (76.00%), Query Frame = 2
Query:  134 NFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVW 733
            +F ++F +TWG  + ++  NG  L L LDK++GS  +SK  +LFG ++M +KLVPGNSAGTV AYYL S GST DEIDFEFLGN +G PYT+HTN++  GKG++EQQF  WF+PT  FH Y+I WNP  +V+ VDGTPIR F+N ES G+A+P  Q M++++SLWNA+DWAT+GG VKT+WT APF A  R + A AC+W
Sbjct:   28 DFSKNFIVTWG--KDHMFMNGTNLRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLW 225          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.145e-67
Identity = 116/197 (58.88%), Postives = 146/197 (74.11%), Query Frame = 2
Query:  137 FHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            F ++++ +W       LN G    L LD++SG+GFQSK  YLFG   M+++LV G+SAG VTA+YL S  +  DEIDFEFLGN +G PY L TNVFT GKG++EQ+ +LWFDPT  +H+YS+LWN   IV  VD  PIR FKNS+ +GV FP NQPM+IYSSLW+ADDWATRGGL KT+W +APFTASY +F+ D C
Sbjct:   33 FWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGC 229          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.240e-67
Identity = 115/197 (58.38%), Postives = 142/197 (72.08%), Query Frame = 2
Query:  137 FHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            F +++  TW        N G  + L LDK +G+GFQ+K  YLFG   M +K+VPG+SAGTVTA+ L S  +  DEIDFEFLGN +G PY L TNVFT GKGD+EQ+ +LWFDPT  +H YS+LWN  +IVF VD  PIR FKN + +GV FP NQPM++Y+SLWNADDWATRGGL KTDW+ APF A Y+ F+ D C
Sbjct:   32 FGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGC 228          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.177e-65
Identity = 116/197 (58.88%), Postives = 143/197 (72.59%), Query Frame = 2
Query:  137 FHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            F +++  TW       LN G  L L LDK +G+GFQSK  YLFG   M +KL  G++AG VTA+YL S  +  DEIDFEFLGN +G P  L TNVFT GKG++EQ+ +LWFDP+  +HTYS+LWN  +IVF VD  PIR FKN++ +GV FP NQPM++YSSLWNADDWATRGGL KT+W +APF ASYR F+ D C
Sbjct:   34 FGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGC 230          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 3.424e-65
Identity = 108/181 (59.67%), Postives = 143/181 (79.01%), Query Frame = 2
Query:  185 LNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            +N G++  L LD  SG+GF+S+++YLFGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E DFEFLGN +G+PY + TN++ NG G++EQ+ +LWFDPT +FHTYSILW+ + +VF VD TPIR  KN E  G+ F K+Q M +YSS+WNADDWAT+GGLVKTDW+HAPF ASY+ F  DAC
Sbjct:   43 VNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDAC 223          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.424e-65
Identity = 115/197 (58.38%), Postives = 142/197 (72.08%), Query Frame = 2
Query:  137 FHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            F +++  TW        N G  L L LDK +G+GFQSK  YLFG   M +KL  G++AG VTA+YL S  +  DEIDFEFLGN +G P  L TNVFT GKG++EQ+ +LWFDP+  +HTYSILWN  +IVF VD  PIR FKN++ +GV FP NQPM++YSSLWNADDWATRGGL KT+W +APF ASY+ F+ D C
Sbjct:   35 FGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGC 231          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 5.841e-65
Identity = 107/198 (54.04%), Postives = 152/198 (76.77%), Query Frame = 2
Query:  137 FHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTW-DEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            F +DF   W +     + +G+ + L LD+++G GF SK +YLFG++ M++KL+PG+SAGTVTA+Y+ S  +T  DE+DFEFLGN SG PY++ TN+F +GKGD+EQ+ +LWFDP+ D+HTY+ILW+ + IVF VD  PIRE+KN+E+  +A+P +QPM +YS+LW ADDWATRGGL K DW+ APF A Y++F+ + C
Sbjct:   35 FVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGC 232          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.899e-64
Identity = 110/198 (55.56%), Postives = 146/198 (73.74%), Query Frame = 2
Query:  137 FHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADAC 727
            F  DF I W D     ++ G+ + L LD +SG GF SK +YLFG++ M++KL+PG+SAGTVTA+Y+ S   S  DE+DFEFLGN SG PYT+ TNVF +GKGD+EQ+ +LWFDP+ DFH Y+I WN  RIVF VD  PIR +KN+E+  V +P+ QPM +YS+LW ADDWATRGG+ K +W+ APF A Y++F+ + C
Sbjct:   34 FEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGC 231          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.713e-62
Identity = 106/202 (52.48%), Postives = 142/202 (70.30%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNNGQLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVW 733
            +G+F++DF +TW     N  N+G+  TL LD+ SG+ F S   +LFG+IDM++KL+ G+S GTV AYY+ S     DEIDFEFLGN++G PY L TNV+  G  ++E++ HLWFDP  DFHTYSILWN  +IVF VD  PIR ++N    GVA+P+ QPM + +SLWN + WATRGG  K DW+  PF AS+ ++  DAC+W
Sbjct:   34 SGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIW 235          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.759e-61
Identity = 109/208 (52.40%), Postives = 151/208 (72.60%), Query Frame = 2
Query:  128 AGNFHQDFDITWGDGRANILNNG---QLLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKS-PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFNADACVWSN 739
            A  F++ FD+        ++++    Q + L+LD++SGSGF SK+ YLFG+  +Q+KLV GNSAGTVT++YL S  G   DEID EF+GNLSG+PY ++TNV+ NG G KE QF+LWFDPTADFHTY I+WNPQ I+F VD  P+R FK  + +  A+P+++PMR++++LW+   WATR G VK DW+ APF  SYR ++ +ACV +N
Sbjct:   25 AAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDL--AYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNACVNNN 230          
The following BLAST results are available for this feature:
BLAST of FC924987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
XTH26_ARATH1.257e-6758.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC2.145e-6758.88Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN6.240e-6758.38Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB1.177e-6558.88Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH9_ARATH3.424e-6559.67Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH4_ARATH3.424e-6558.38Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH6_ARATH5.841e-6554.04Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH2.899e-6455.56Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH2.713e-6252.48Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ1.759e-6152.40Xyloglucan endotransglycosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA08FM1 TF Citrus clementina cDNA clone KN0AAP8YA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924987 ID=FC924987; Name=FC924987; organism=Citrus clementina; type=EST; length=813bp
CTTTAAAAAATTTCAAACTTCTCTCCAACTCAATTTCTTCTATCTTGTTG
TTGCTCAGACGAAAGCTTCCATGGCTTCAGTATTGCATCTGTCGCTGCTG
CTTCTTGGCTCTTTGATGGTTACCTCTGCTGGTAACTTCCACCAAGATTT
TGATATCACTTGGGGAGACGGGCGTGCTAATATACTCAACAACGGCCAGC
TTCTTACTCTTTCCCTTGATAAAGCCTCTGGCTCCGGCTTCCAGTCCAAG
AATGAGTATCTATTCGGCAAGATTGATATGCAACTCAAACTAGTCCCTGG
CAACTCTGCCGGCACTGTCACTGCTTATTATTTAAAATCGCCAGGATCAA
CATGGGATGAGATAGACTTCGAGTTCTTGGGGAATTTAAGTGGTGACCCT
TACACTCTGCATACCAATGTATTCACAAATGGCAAAGGTGACAAAGAACA
ACAATTTCACCTCTGGTTTGACCCCACTGCTGACTTTCACACCTATTCTA
TCCTCTGGAATCCTCAGCGCATTGTCTTCTCTGTGGATGGTACTCCCATA
AGAGAGTTCAAGAACTCAGAGTCAATTGGAGTTGCATTCCCAAAGAATCA
GCCAATGAGAATATACTCATCTCTCTGGAATGCTGATGACTGGGCTACAA
GAGGTGGCCTTGTCAAGACAGATTGGACGCATGCTCCCTTCACGGCTTCC
TACAGAAACTTCAACGCTGATGCCTGTGTCTGGTCTAATGGAAAATCTTC
TTGCGCTTCAAGTTCACCTTCCTCTCCATCCAGCAGCAGTGCCTGGTTCT
CACAAGAGCTTGA
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