FC924987

Overview
NameFC924987
Unique NameFC924987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: GUB_BACSU (Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 51/176 (28.98%), Postives = 88/176 (50.00%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQLLTLSLDKASGSGF-----QSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLWN---ADDW 643
            F+ TW     ++ + G++  L+L   + + F     +S   Y +G  ++++K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G+ E+   L FD    +HTY+  W P  I + VDG    + K++ +  +      P +I  +LWN    D+W
Sbjct:   58 FNCTWRANNVSMTSLGEM-RLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATNQI---PTTPGKIMMNLWNGTGVDEW 220          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.737e-12
Identity = 59/205 (28.78%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  149 FDITWGDGRANILNNGQLLTLSLDKA-------------SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTADFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVAFPKNQPMRIYSSLW---NADDWATRGGLVKTDWTHAPFTASYR 706
            FD  W    A ++N+G  L LS+D+              SG  F++ N Y +G  +  ++ +  +  G V++++     S  + WDEID E LG    +   +  N +TNG+G  E+ + L FD +  +HTY   W P  I + VDG  +  ++ ++ I    PK  P +I  + W     DDW      +K      P TA Y+
Sbjct:  598 FDCWWYKRNA-VINDG-CLQLSIDQKWTNDKNPDWDPRYSGGEFRTNNFYHYGYYECSMQAMKND--GVVSSFFTYTGPSDDNPWDEIDIEILGK---NTTQVQFNYYTNGQGKHEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDGREV--YRATQDI----PKT-PGKIMMNAWPGLTVDDW------LKAFNGRTPLTAHYQ 782          
BLAST of FC924987 vs. ExPASy Swiss-Prot
Match: CRF1_ASPFU (Probable glycosidase crf1 OS=Aspergillus fumigatus GN=crf1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 51/156 (32.69%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  257 YLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDKEQQFHLWFDPTAD----FHTYSILWNPQRIVFSVDGTPIREFK-NSESIGVAFPKNQPMRIYSSLWNADDWATRGGLVK-----TDWTHAPFT 694
            + FGK ++ +K  PG   G V++  L+S     DE+D+E LG   GD   + TN F  GKGD        + P A     FHTY+I W    + +S+DG  +R    N    G  FP+  PMR+    W   D +   G ++     TD++  P+T
Sbjct:   89 FFFGKAEVVMKAAPGT--GVVSSIVLES--DDLDEVDWEVLG---GDTTQVQTNYF--GKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWSIDGAVVRTLTYNDAKGGTRFPQT-PMRLRLGSWAGGDPSNPKGTIEWAGGLTDYSAGPYT 234          
The following BLAST results are available for this feature:
BLAST of FC924987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
GUB_BACSU2.575e-1228.98Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 S... [more]
XYND_RUMFL5.737e-1228.78Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
CRF1_ASPFU4.856e-1132.69Probable glycosidase crf1 OS=Aspergillus fumigatus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA08FM1 TF Citrus clementina cDNA clone KN0AAP8YA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924987 ID=FC924987; Name=FC924987; organism=Citrus clementina; type=EST; length=813bp
CTTTAAAAAATTTCAAACTTCTCTCCAACTCAATTTCTTCTATCTTGTTG
TTGCTCAGACGAAAGCTTCCATGGCTTCAGTATTGCATCTGTCGCTGCTG
CTTCTTGGCTCTTTGATGGTTACCTCTGCTGGTAACTTCCACCAAGATTT
TGATATCACTTGGGGAGACGGGCGTGCTAATATACTCAACAACGGCCAGC
TTCTTACTCTTTCCCTTGATAAAGCCTCTGGCTCCGGCTTCCAGTCCAAG
AATGAGTATCTATTCGGCAAGATTGATATGCAACTCAAACTAGTCCCTGG
CAACTCTGCCGGCACTGTCACTGCTTATTATTTAAAATCGCCAGGATCAA
CATGGGATGAGATAGACTTCGAGTTCTTGGGGAATTTAAGTGGTGACCCT
TACACTCTGCATACCAATGTATTCACAAATGGCAAAGGTGACAAAGAACA
ACAATTTCACCTCTGGTTTGACCCCACTGCTGACTTTCACACCTATTCTA
TCCTCTGGAATCCTCAGCGCATTGTCTTCTCTGTGGATGGTACTCCCATA
AGAGAGTTCAAGAACTCAGAGTCAATTGGAGTTGCATTCCCAAAGAATCA
GCCAATGAGAATATACTCATCTCTCTGGAATGCTGATGACTGGGCTACAA
GAGGTGGCCTTGTCAAGACAGATTGGACGCATGCTCCCTTCACGGCTTCC
TACAGAAACTTCAACGCTGATGCCTGTGTCTGGTCTAATGGAAAATCTTC
TTGCGCTTCAAGTTCACCTTCCTCTCCATCCAGCAGCAGTGCCTGGTTCT
CACAAGAGCTTGA
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