FC925043

Overview
NameFC925043
Unique NameFC925043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 5.270e-13
Identity = 48/198 (24.24%), Postives = 87/198 (43.94%), Query Frame = 2
Query:   65 VPDRYIRPDQDSPLIS----DDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVH-LRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEE-----MREFFENGVQAMRMNYYP 628
            +PD Y    +D  L S           IP+ID+              ++  AC+ WG FQ+ NHG+    L+ ++      F L ++ K K  +    + G+G A + S   K  W++ F++   P++  RK  L+P+   +  + +E Y   +K LA  L+      L + +E+     +         A+++N+YP
Sbjct:   30 LPDSYKWTPKDDLLFSAAPSPPATGENIPLIDLDHPDATN-------QIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSPLNDFRK--LWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYP 218          

HSP 2 Score: 36.965 bits (84), Expect = 5.270e-13
Identity = 14/26 (53.85%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILLQ 704
            P CP+P++ MGL+ H+D+  LTIL Q
Sbjct:  218 PVCPEPDRAMGLAAHTDSTLLTILYQ 243          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 5.287e-13
Identity = 37/132 (28.03%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  194 KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFF 589
            K+  AC+ WGFF+ VNHG+S   L+K++K  +  +   MEE+ K       ++  G   + SE   +DW   F +  LPV        P L    R  ++ ++ +++ L+E L+  + E L ++   +++ F
Sbjct:   23 KIKDACENWGFFECVNHGISLELLDKVEKMTKEHYKKCMEERFK-----ESIKNRGLDSLRSEVNDVDWESTFYLKHLPVSNISD--VPDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVF 147          

HSP 2 Score: 34.2686 bits (77), Expect = 5.287e-13
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILLQ 704
            PPCP P+ V GL  H+DA  + +L Q
Sbjct:  163 PPCPNPDLVKGLRAHTDAGGIILLFQ 188          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 5.292e-13
Identity = 37/128 (28.91%), Postives = 61/128 (47.66%), Query Frame = 2
Query:  206 ACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFF 589
            AC+ WGFF+LVNHG+    ++ ++K  +G +   ME++ K       +E      V +E   LDW   F +  LP         P L    RE +  ++  L+ LAE L+  + E L ++   ++  F
Sbjct:   27 ACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEA-----VQAEVTDLDWESTFFLRHLPT--SNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAF 147          

HSP 2 Score: 34.2686 bits (77), Expect = 5.292e-13
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILLQ 704
            PPCP+P+ + GL  H+DA  + +L Q
Sbjct:  163 PPCPKPDLIKGLRAHTDAGGIILLFQ 188          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.853e-13
Identity = 49/196 (25.00%), Postives = 93/196 (47.45%), Query Frame = 2
Query:   83 RPDQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKY--------WQHPGDMEG--FGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIK----DEEMREFFENGVQAMRMNYYP 628
            R ++D P+ +D      +P+ID+Q             ++  AC+++G FQ++NHG     + +  +  + FF L  EEK+K+        ++ P + +   + +   +S E+ L W D  +    P+     + +P+ P   RE +  YS+E++ L   ++  + E L +K    D E+ +     +Q M  NYYP
Sbjct:   24 RAEKDVPVGND------VPIIDLQQHHHLLVQ-----QITKACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLKLGYFDNELSQ-----IQMMLTNYYP 203          

HSP 2 Score: 30.0314 bits (66), Expect = 6.853e-13
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILLQ 704
            PPCP P   +G   H D   +T+L Q
Sbjct:  203 PPCPDPSSTLGSGGHYDGNLITLLQQ 228          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.871e-13
Identity = 37/128 (28.91%), Postives = 61/128 (47.66%), Query Frame = 2
Query:  206 ACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFF 589
            AC+ WGFF+LVNHG+    ++ ++K  +G +   ME++ K       +E      V +E   LDW   F +  LP         P L    RE +  ++  L+ LAE L+  + E L ++   ++  F
Sbjct:   27 ACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEA-----VQAEVTDLDWESTFFLRHLPT--SNISQVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAF 147          

HSP 2 Score: 34.2686 bits (77), Expect = 6.871e-13
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILLQ 704
            PPCP+P+ + GL  H+DA  + +L Q
Sbjct:  163 PPCPKPDLIKGLRAHTDAGGIILLFQ 188          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.159e-12
Identity = 35/132 (26.52%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  194 KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFF 589
            +++ AC+ WGFF+LVNHG+S   ++K++K  +  +   ME++ K       +   G   V +E    DW   F +  LPV          L    ++ ++ ++ EL+ LAE ++  + E L ++   +++ F
Sbjct:   24 QINDACENWGFFELVNHGISHELMDKVEKLTKEHYRKCMEQRFKEM-----VASKGLDSVETEINDTDWESTFFLRHLPVSNMSE--IGDLDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVF 148          

HSP 2 Score: 36.1946 bits (82), Expect = 1.159e-12
Identity = 14/26 (53.85%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILLQ 704
            PPCP+PE + GL  H+DA  L +L Q
Sbjct:  164 PPCPKPELIKGLRAHTDAGGLILLFQ 189          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 53/206 (25.73%), Postives = 91/206 (44.17%), Query Frame = 2
Query:   65 VPDRYIRPDQDSPLISD-DTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQ--HPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFF--ENGVQAMRMNYYPSLSSAREGYGPVA 667
            +P  +IRP+++ P  +       +IP ID+               +  A +EWG FQ+ NHG+ +  + KL+   + FF L  EEK+ Y +     D++G+G       E K  W D       P        +PK PPS R   E Y+  ++ + + L + +   L ++   ++E    ++    +++NYYP         G VA
Sbjct:   19 IPAEFIRPEKEQPASTTYHGPAPEIPTIDLDDPVQDRLVR----SIAEASREWGIFQVTNHGIPSDLICKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPKNPPSYRAVNEEYAKYMREVVDKLFTYLSLGLGVEGGVLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVA 220          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 63/237 (26.58%), Postives = 108/237 (45.57%), Query Frame = 2
Query:   14 SLLVPCVQELVKNPALV-----VPDRYIRPDQDSP-LISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRK------PHLFPKLPPS----LRETLEVYSMELKSLAENLISKMGEVLNIKDEE---MREFFENGVQAMRMNYYPSLSSARE--GYGP 661
            S++V   QE+V + A++     +P ++I P ++SP  ++ + L  ++ +ID+              +   AC+  GFF +VNHG+  A LE+  + ++ FF L + EK++  +  G+  G+  +F      KL W +  S         +       +L  KL       L E    Y  E+  L+  L+  +GE L I  +     R FF+     MR+NYYP+     +  G GP
Sbjct:    2 SMVVQQEQEVVFDAAVLSGQTEIPSQFIWPAEESPGSVAVEEL--EVALIDVGAGAERSSVVRQVGE---ACERHGFFLVVNHGIEAALLEEAHRCMDAFFTLPLGEKQRAQRRAGESCGYASSFTGRFASKLPWKETLSFRYSSAGDEEGEEGVGEYLVRKLGAEHGRRLGEVYSRYCHEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGP 233          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.533e-12
Identity = 54/203 (26.60%), Postives = 89/203 (43.84%), Query Frame = 2
Query:   32 VQELVKNPALVVPDRYIRP-DQDSPLISDDTLISQIPVIDMQXXXXXXXXXXXXAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEG---FGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLFPKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFFENGVQAMRMNYYP 628
            V  L    A  +PD ++ P D+  P  +D +L    P+IDM             A LD   KE+GF Q+VNHG+S   L ++      FF++  E+K +++            G AF    E+   W D+  +L  P+       +P  P  LRE +  Y+   + +A  ++  + E L ++ +        G   + +NYYP
Sbjct:    4 VMNLTPVHASSIPDSFLLPADRLHPATTDVSL----PIIDMSRGRDEVRQ----AILDSG-KEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDKAEFFSEDRSERNKLFCGSAFETLGEKY--WIDVLELL-YPLPSGDTKDWPHKPQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPDFFVGDISGGRVVVDINYYP 194          

HSP 2 Score: 33.4982 bits (75), Expect = 2.533e-12
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILL 701
            PP P P + +GL PH D   +T+LL
Sbjct:  194 PPSPNPSRTLGLPPHCDRDLMTVLL 218          
BLAST of FC925043 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.214e-12
Identity = 34/135 (25.19%), Postives = 69/135 (51.11%), Query Frame = 2
Query:  191 AKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQHPGDMEGFGQAFVVSEEQKLDWADLFSMLTLPVHLRKPHLF--PKLPPSLRETLEVYSMELKSLAENLISKMGEVLNIKDEEMREFF 589
            A ++ AC+ WGFF++VNHG+    ++  +K  +  + +SME+K         +E   +     E + +DW   F +     HL + +L+  P +    R  ++ +   L++LAE+L+  + E L ++   +++ F
Sbjct:   25 ALINDACENWGFFEIVNHGLPHDLMDNAEKMTKEHYKISMEQKFNDMLKSKGLENLER-----EVEDVDWESTFYLR----HLPQSNLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVF 150          

HSP 2 Score: 32.7278 bits (73), Expect = 7.214e-12
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 3
Query:  627 PPCPQPEKVMGLSPHSDAPALTILLQ 704
            P CP+PE + GL  H+DA  + +L Q
Sbjct:  166 PACPKPEMIKGLRAHTDAGGIILLFQ 191          
The following BLAST results are available for this feature:
BLAST of FC925043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
G3OX1_ARATH5.270e-1324.24Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO1_ARATH5.287e-1328.031-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
ACCO1_SOLLC5.292e-1328.911-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
HY6H_HYONI6.853e-1325.00Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
ACCO4_SOLLC6.871e-1328.911-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO3_CUCME1.159e-1226.521-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
FLS_CITUN1.208e-1225.73Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
GAOX1_ORYSJ2.061e-1226.58Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
IDS2_HORVU2.533e-1226.60Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
ACCO1_BRAJU7.214e-1225.191-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YA03FM1 TF Citrus clementina cDNA clone KN0AAP3YA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925043 ID=FC925043; Name=FC925043; organism=Citrus clementina; type=EST; length=709bp
CCAGATTGGAAGTTCTCTCCTTGTGCCTTGTGTTCAAGAGTTGGTCAAGA
ATCCTGCGTTAGTTGTCCCCGACAGATACATACGTCCAGATCAAGATTCA
CCACTCATTTCTGATGATACTTTGATTTCACAGATACCAGTTATTGACAT
GCAAAGCTTACTTTCTGAAGAATCAATGGATTCTGAGCTAGCCAAGCTCG
ACTTCGCATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAATCATGGAATG
AGCACAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGGATTCTTCAA
TCTCAGCATGGAAGAAAAGAAAAAATATTGGCAGCATCCAGGAGATATGG
AAGGCTTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAAGCTTGATTGG
GCTGACCTTTTCTCCATGCTGACTCTTCCAGTTCATCTGAGGAAGCCACA
CTTATTTCCTAAGCTCCCTCCTTCCCTCAGAGAGACCTTGGAAGTTTACT
CAATGGAATTAAAATCCCTAGCCGAGAACCTAATATCGAAAATGGGAGAA
GTGTTAAATATCAAAGATGAAGAAATGAGAGAATTCTTTGAAAATGGAGT
GCAAGCAATGAGGATGAATTATTACCCCTCCCTGTCCTCAGCCCGAGAAG
GTTATGGGCCTGTCGCCACATTCCGATGCACCTGCCCTTACCATTCTGCT
ACAACTTAA
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