FC925108

Overview
NameFC925108
Unique NameFC925108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length631
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.197e-79
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.197e-79
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.197e-79
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.197e-79
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.197e-79
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRAVFVDLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.564e-79
Identity = 141/179 (78.77%), Postives = 151/179 (84.36%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRE ISIH+GQAGIQVGNACWEL+CLEHGIQPDGQMP D+     DDAFNTFFSETGAGKHVPR VFVDLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE++D+CLDRIRKLADNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVST
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPPDQAGRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.014e-78
Identity = 134/179 (74.86%), Postives = 153/179 (85.47%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECISIH+GQAG+Q+GNACWELYCLEHGIQP GQMPSDK VGG DD+FNTFFSETG+GKHVPRAVFVDLEPTV+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE +DL LDR+RKL+D CTGLQGFL+F++                  VDYGKKSKL F++YP+PQV+T
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVAT 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.258e-78
Identity = 136/179 (75.98%), Postives = 155/179 (86.59%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRE ISIHIGQAG+Q+GNACWELYCLEHGIQPDGQMPSDK++GG DD+F+TFFSETG+G+HVPRAV +DLEPTVIDE+RTGTYR LFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIR+LADNCTGLQGFLVF++                  VDYGKK+KL F+VYP+PQVST
Sbjct:    1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGCDDSFSTFFSETGSGRHVPRAVMIDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDRIRRLADNCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSVYPAPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.581e-78
Identity = 134/179 (74.86%), Postives = 149/179 (83.24%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECIS+H+GQAG+Q+GN CWELYCLEHGIQPDGQMPSDKT+GGGDD+F TFF ETGAGKHVPRA+FVDLEPTVIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYTIGKEI+D  LDRIRKLAD CTGLQGFL F++                   DYGKKSKL F++YP+PQVST
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVST 179
[Close]
BLAST of FC925108 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.912e-77
Identity = 136/179 (75.98%), Postives = 152/179 (84.92%), Query Frame = 2 
Query:   95 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVST 631
            MRECISIH+GQAG+Q+GNA WELYCLEHGIQPD +MPSDKTVG  DD+FNTFFSETGAGKHVPRAVFVDLEP+V+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDRIRKLAD CTGLQGFL+F++                  VDYGKKSKL F VYP+PQV+T
Sbjct:    1 MRECISIHVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVAT 179
The following BLAST results are available for this feature:
BLAST of FC925108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBA4A_RAT1.197e-7976.54Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE1.197e-7976.54Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA1.197e-7976.54Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN1.197e-7976.54Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN1.197e-7976.54Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA_PLAYO1.564e-7978.77Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_ENTDO1.014e-7874.86Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA_HAECO2.258e-7875.98Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA5_CHICK8.581e-7874.86Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA1_HOMAM1.912e-7775.98Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YB16FM1 TF Citrus clementina cDNA clone KN0AAP3YB16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925108 ID=FC925108; Name=FC925108; organism=Citrus clementina; type=EST; length=631bp
CAAGAAGGCGTCTTAATAAACGCCTTCGTTTAGATTCAATTACTTCTTCT
TTTGGCTGTGTACGTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGA
GAGTGCATTTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGC
CTGCTGGGAACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAA
TGCCAAGTGATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTT
TTCAGTGAAACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGA
TCTTGAGCCCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGC
TCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAAC
TTCGCCCGTGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCT
TGACCGCATCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCC
TTGTTTTCAATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTT
CTTCTGGAGAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTT
CACTGTCTACCCATCTCCTCAGGTCTCCACA
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