FC925111

Overview
NameFC925111
Unique NameFC925111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.580e-44
Identity = 88/156 (56.41%), Postives = 111/156 (71.15%), Query Frame = 3
Query:   69 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGI--GKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGR 530
            K +FD+++GG+PAGR+V E+++DVTP+TAENF  LC G+ G    K G PL Y+GS FHRVI GFMCQ            ESIYG KF DENF +KH  P +LSMANAGP TNGSQ F+  A T  LDGKHVVFG+V++G  VV+AIE+  +++ R
Sbjct:    6 KTYFDLSIGGKPAGRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADR 161          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.064e-44
Identity = 91/156 (58.33%), Postives = 106/156 (67.95%), Query Frame = 3
Query:   51 SKMP---NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIE 506
            +K+P   NP VFFD+T+GG+P GRI  ELF DV P+TAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              I+G K F DENF  KH  PG+LSMANAGP TNGSQFF+ T  T +LD KHVVFG+V +GMDVVK +E
Sbjct:    4 TKLPESGNPLVFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKT-PVGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKME 158          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 4.598e-44
Identity = 92/159 (57.86%), Postives = 102/159 (64.15%), Query Frame = 3
Query:   51 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSG 527
            SK  NP VFFD+    +P GRI MELF+++ P+TAENFRALCTGEKG G       +K S FHRVIP F+CQ             SIYG KF DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVFG V  GMD VK IE  GS  G
Sbjct:  920 SKETNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKG 1071          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.598e-44
Identity = 89/166 (53.61%), Postives = 110/166 (66.27%), Query Frame = 3
Query:   45 NQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTQQ 539
            + +K PNP VFFD+T+GG+  GRI MELF  +TPRTAENFR  CTGE      G+P  YK S FHRVI  FM Q             +IYG+ +F DENF+ KH  PG+LSMAN+GP TNG QFF+ T  T +L+ KHVVFGQVV+GMDVV+ IE   ++  +  Q
Sbjct:    7 SSAKTPNPVVFFDITLGGESLGRIKMELFTSITPRTAENFRQFCTGESK-SPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQ 171          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.598e-44
Identity = 85/151 (56.29%), Postives = 103/151 (68.21%), Query Frame = 3
Query:   69 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSS 521
            K+FFD+ +GG+ AGRIV+ LF D  P+T ENF+ L TG KG G       Y+GS FHR+IP FM Q             SIYGSKF DE+F  KH GPG+LSMANAGP TNGSQFF+CT  T WLD +HVVFG V++G+DVVK +E   +S
Sbjct:   83 KIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYG-------YQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETS 226          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.006e-44
Identity = 86/168 (51.19%), Postives = 110/168 (65.48%), Query Frame = 3
Query:   42 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTQQAP 545
            +  S   NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG+++ G+ V++ IE V +      + P
Sbjct:    3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLP 168          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.006e-44
Identity = 86/168 (51.19%), Postives = 110/168 (65.48%), Query Frame = 3
Query:   42 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTQQAP 545
            +  S   NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG+++ G+ V++ IE V +      + P
Sbjct:    3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLP 168          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 7.844e-44
Identity = 93/160 (58.13%), Postives = 106/160 (66.25%), Query Frame = 3
Query:   63 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIEKVGSSSGRTQQ 539
            NP VFFD+ +GG P GRI MELFADVTPRTAENFR  CTGE      GKP  YK S FHRVI  FM Q             +IYG+ KFADENFV KH   G+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQVV GMD+V+ IE   +   +  Q
Sbjct:   13 NPIVFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQ 171          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.893e-43
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 3
Query:   42 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVKGMDVVKAIE 506
            +  S   NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHRVI  FM Q             SIY   FADENF  +H+ PG+LSMAN+GP TNG QFF+  +K +WLDGKHVVFG+++ G+ V++ IE
Sbjct:    3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIE 155          
BLAST of FC925111 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.893e-43
Identity = 93/157 (59.24%), Postives = 104/157 (66.24%), Query Frame = 3
Query:   69 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--KGMDVVKAIEKVGSSSGRT 533
            KV+FD+T+   PAGRI   LF DV P+TAENFRAL TGEKG G       Y GSSFHRVI  FM Q            +SIYG KFADENF  KH   G+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V     M +V+ IE +GSSSGRT
Sbjct:    4 KVYFDITIDDAPAGRITFNLFDDVVPKTAENFRALATGEKGFG-------YAGSSFHRVITDFMLQGGDFTRGDGTGGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVADDDSMALVRKIEALGSSSGRT 153          
The following BLAST results are available for this feature:
BLAST of FC925111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
PPID_ASHGO1.580e-4456.41Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIH_GIBZE2.064e-4458.33Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
RBP2_BOVIN4.598e-4457.86E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIH_ASPOR4.598e-4453.61Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
CYPB_VICFA4.598e-4456.29Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
PPIH_HUMAN6.006e-4451.19Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN6.006e-4451.19Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIH_ASPFU7.844e-4458.13Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIH_MOUSE3.893e-4354.19Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
PPIA_STRCH3.893e-4359.24Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YB19FM1 TF Citrus clementina cDNA clone KN0AAP3YB19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925111 ID=FC925111; Name=FC925111; organism=Citrus clementina; type=EST; length=549bp
CCAAATCAGAACTTTTTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAA
TCAAAAATGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCA
GCCCGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAA
CCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAG
TCCGGCAAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCC
CGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAG
GCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAG
CACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAA
CGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGA
AGCACGTTGTGTTCGGTCAAGTCGTCAAAGGAATGGACGTCGTCAAGGCC
ATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCCAACAAGCCCCGTCGT
back to top