FC925119

Overview
NameFC925119
Unique NameFC925119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length833
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU1_THETN (Elongation factor Tu-A OS=Thermoanaerobacter tengcongensis GN=tufA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.598e-35
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            F RTK HVNVGTIGHVDHGKTTLTAAIT +L++ G A+A  +DEIDKAPEEK RGITI T HVEYETAKRHYAHVDCPGHADYVK
Sbjct:    6 FERTKPHVNVGTIGHVDHGKTTLTAAITLILSKAGLAQAKGYDEIDKAPEEKARGITINTTHVEYETAKRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_RICTY (Elongation factor Tu OS=Rickettsia typhi GN=tuf PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.123e-34
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT +LA+ G AKA A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIILAKTGGAKATAYDQIDAAPEEKERGITISTAHVEYETNNRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_RICMO (Elongation factor Tu OS=Rickettsia montana GN=tuf PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.123e-34
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G A+A A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITMVLAKTGGAQATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.123e-34
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = 2
Query:  131 SISDAFSANETSATRCGPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            +++ +F A    A +  PS+    RS A F R+K HVN+GTIGHVDHGKTTLTAAITKVL+E+G A  + +  ID+APEE+ RGITI+TAHVEY+T KRHYAHVDCPGHADY+K
Sbjct:    4 NLAGSFRAVSRVAFKTRPSLV---RSYAAFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLSEKGGANFLDYGSIDRAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYIK 114          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_LAWIP (Elongation factor Tu OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tuf PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.123e-34
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            FTR K HVNVGTIGH+DHGKTTLTAAITKV + +   K + +DEIDKAPEEK+RGITIATAHVEYET KRHYAHVDCPGHADY+K
Sbjct:    6 FTRNKPHVNVGTIGHIDHGKTTLTAAITKVASMKMGGKFVGYDEIDKAPEEKERGITIATAHVEYETPKRHYAHVDCPGHADYIK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_ANADF (Elongation factor Tu OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.467e-34
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 2
Query:  218 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            F R K HVNVGTIGHVDHGKTTLTAAITK  A +G+A+ +A+D+IDKAPEE++RGITIATAHVEY T KRHYAHVDCPGHADYVK
Sbjct:    6 FERNKPHVNVGTIGHVDHGKTTLTAAITKYCATQGRAQFMAYDQIDKAPEERERGITIATAHVEYSTDKRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_RICSI (Elongation factor Tu OS=Rickettsia sibirica GN=tuf PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.915e-34
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G A+A A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_RICRS (Elongation factor Tu OS=Rickettsia rickettsii (strain Sheila Smith) GN=tuf PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.915e-34
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G A+A A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_RICRO (Elongation factor Tu OS=Rickettsia rickettsii (strain Iowa) GN=tuf PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.915e-34
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G A+A A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVK 90          
BLAST of FC925119 vs. ExPASy Swiss-Prot
Match: EFTU_RICRI (Elongation factor Tu OS=Rickettsia rickettsii GN=tuf PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.915e-34
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 2
Query:  212 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 472
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G A+A A+D+ID APEEK+RGITI+TAHVEYET  RHYAHVDCPGHADYVK
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQIDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVK 90          
The following BLAST results are available for this feature:
BLAST of FC925119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_THETN8.598e-3582.35Elongation factor Tu-A OS=Thermoanaerobacter tengc... [more]
EFTU_RICTY1.123e-3479.31Elongation factor Tu OS=Rickettsia typhi GN=tuf PE... [more]
EFTU_RICMO1.123e-3479.31Elongation factor Tu OS=Rickettsia montana GN=tuf ... [more]
EFTU_PICGU1.123e-3463.16Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_LAWIP1.123e-3480.00Elongation factor Tu OS=Lawsonia intracellularis (... [more]
EFTU_ANADF1.467e-3480.00Elongation factor Tu OS=Anaeromyxobacter sp. (stra... [more]
EFTU_RICSI1.915e-3479.31Elongation factor Tu OS=Rickettsia sibirica GN=tuf... [more]
EFTU_RICRS1.915e-3479.31Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICRO1.915e-3479.31Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICRI1.915e-3479.31Elongation factor Tu OS=Rickettsia rickettsii GN=t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YD10FM1 TF Citrus clementina cDNA clone KN0AAP8YD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925119 ID=FC925119; Name=FC925119; organism=Citrus clementina; type=EST; length=833bp
CTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCGGAATCAATGGCTT
CGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGTGCCGTTTTCATCC
CAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCTCCGACGCTTTCTC
CGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCTGTTAACCCCTGGT
GGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCACGTGAATGTGGGA
ACAATTGGACACGTTGATCATGGGAAGACTACACTTACTGCTGCGATTAC
CAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATTGCCTTTGATGAAA
TTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTACTATTGCAACGGCC
CATGTAGAGTATGAGACTGCTAAGCGTCACTATGCACATGTTGACTGTCC
TGGACATGCTGATTATGTTAAAGTAAGAAGTAAATATTCAATGCTGCCGG
GTAAATTTAGTTGTTAGAGCGATCCTCTGGGAAATTGATGTATTCTCAGT
GAAAAAAAAAAAGAGAAACAAAAGAAAGAAAGAAAAATTAAAAAGGCAAA
AATGATGTTAAGAGAATTCGAAGCTGCTGAGGTGTTAGTATGTTCCCTCA
ACAGCAACCTAATTTTATGGATAAAGTTTTACATTTGAAGCATAGCAGAA
GCAAAAGATTTAGCATGCTAACATTTTAAAGGACCTGCATTCATGTCTTG
CACGGTTTAGATATTTCATTTTTTTTCTTGAAGTTTTGTCCCATCTAATT
TTCTAAACTCATATTCATTCCAGAGATGTCAAC
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