FC925138

Overview
NameFC925138
Unique NameFC925138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.762e-38
Identity = 86/167 (51.50%), Postives = 104/167 (62.28%), Query Frame = 3
Query:  264 KAEVVAEALSKHA-VDNPDEI---------ASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            K   VA+A +K A   +P+E+         +S    STR +    KLG   C   NPID CWRC  NW  NRK L  C  GFGR   GG  G  YVVTDP DD   +PK GTLR  VIQD+PLWI+F + MVI+LKQELI+N+ +T+DGRGANV IA G  +T+QFV
Sbjct:   33 KKSKVAQAKAKKAYTPHPEEVTNHFNKAVHSSFEGNSTRRNLRTNKLG--QCLATNPIDRCWRCKKNWSANRKDLVKCVKGFGRKTTGGAAGEIYVVTDPSDDSLTDPKFGTLRWGVIQDRPLWIIFGKSMVIRLKQELIINNDKTIDGRGANVQIAGGAQLTVQFV 197          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.005e-38
Identity = 76/140 (54.29%), Postives = 98/140 (70.00%), Query Frame = 3
Query:  321 IASMVEMSTRNSTERRKLGYFS----CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQ 728
            + +   ++T  +  RR+L        C   N ID CWRCD NW +NR+++ADC +GFG NAIGG+ GR YVVTD  DDD V+PKPGTLR+ VIQ +PLWI+F ++M I+L +ELIV S +T+DGRG NVHI NG  I IQ
Sbjct:   16 LLTFAALTTATNIPRRQLSNKKYKGPCRAENAIDKCWRCDPNWAENRQKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQ 155          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL2_ARATH (Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 73/112 (65.18%), Postives = 88/112 (78.57%), Query Frame = 3
Query:  399 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            NPID CWR +  W  NR+ LADC +GFG++A+GG+ G  YVVT+P  DDP NP+PGTLR+AVIQ KPLWI F RDMVI L+ ELI+NS++T+DGRGA V IA G CITIQ V
Sbjct:   37 NPIDSCWRRNPYWASNRRALADCAVGFGKSAVGGKYGSIYVVTNP-SDDPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHV 147          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL6_ARATH (Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.948e-37
Identity = 67/112 (59.82%), Postives = 88/112 (78.57%), Query Frame = 3
Query:  399 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            N ID CWR D NW KNRK+LADC +GFGR   GG++G  YVVTDP D+D + PKPGT+RHAV +D+PLWI+F R M+I+L+QELI+ + +T+DGRGA ++I  G  +T+QFV
Sbjct:  101 NAIDKCWRGDKNWDKNRKKLADCVLGFGRKTTGGKNGPIYVVTDPSDNDLLKPKPGTIRHAVTRDRPLWIIFARSMIIKLQQELIITNDKTIDGRGAKIYITGGAGLTLQFV 212          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL56_SOLLC (Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34
Identity = 68/114 (59.65%), Postives = 84/114 (73.68%), Query Frame = 3
Query:  387 CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQ 728
            C   N ID CWRCD  W ++R+++ADC +GFG NA+GG+ G +Y+VTD  DDD V+PKPGTLR  VIQ  PLWI F R M I+L +ELIV+S +T+DGRG  VHIANG  I IQ
Sbjct:   43 CMAVNSIDKCWRCDPFWAEDRQKMADCALGFGINAMGGKYGPYYIVTDNSDDDVVDPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQ 156          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL16_ARATH (Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  399 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            NP+D CWR   +W  NRK LADC +GFG + +GG+ G  YVVT+P D+   NP+PG+LR+ VIQ KPLWI F +DMVI L+ EL+VNS++T+DGRGA V IA G CITIQ V
Sbjct:   47 NPVDSCWRLKSDWAANRKDLADCVVGFGSSTLGGKKGNLYVVTNPYDNAQ-NPQPGSLRYGVIQAKPLWITFAKDMVITLENELMVNSYKTIDGRGAKVEIAYGPCITIQDV 157          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.000e-33
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  399 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            NPID CWR +  W  NR+ LA C +G+G+ AIGG++G  YVVT+P  D+P  P PGTLR+AV Q KPLWI F RDMVI LK +L++NS++T+DGRGA V IANG C+ I+ V
Sbjct:   36 NPIDACWRRNPKWATNRQALAHCAVGYGKAAIGGKNGPIYVVTNP-SDNPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQV 146          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: PEL17_ARATH (Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 3
Query:  399 NPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGGCITIQFV 734
            NP+D CWR   +W  NR+ LADC +GFG + +GG+ G  YVVT+P D+   NP PG+LR+ VIQ KPLWI F +DMVI L  EL+VNS++T+DGRGA V IA G CITIQ V
Sbjct:   47 NPVDSCWRLKSDWDVNREDLADCAVGFGSSTLGGKKGNIYVVTNPYDNAQ-NPHPGSLRYGVIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDV 157          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.106e-32
Identity = 63/118 (53.39%), Postives = 84/118 (71.19%), Query Frame = 3
Query:  384 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG-CITIQFV 734
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G  Y VT+  DDDPVNP PGTLR+   +D+PLWI+F  +M I+LK  + +  ++T DGRGA V+I NGG C+ I+ V
Sbjct:   18 SCFSDNPIDSCWRGDSNWAQNRMKLADCAVGFGSSTMGGKGGDLYTVTNS-DDDPVNPAPGTLRYGATRDRPLWIIFSGNMNIKLKMPMYIAGYKTFDGRGAQVYIGNGGPCVFIKRV 134          
BLAST of FC925138 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.464e-32
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  384 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFQTLDGRGANVHIANGG 713
            SC + NPID CWR D NW +NR +LADC +GFG + +GG+ G FY VT   DD+PVNP PGTLR+   ++K LWI+F ++M I+LK  L V   +T+DGRGA+VH+ NGG
Sbjct:   18 SCYSDNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGG 126          
The following BLAST results are available for this feature:
BLAST of FC925138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL_LILLO1.762e-3851.50Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL_TOBAC3.005e-3854.29Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL2_ARATH6.695e-3865.18Putative pectate lyase 2 OS=Arabidopsis thaliana G... [more]
PEL6_ARATH1.948e-3759.82Probable pectate lyase 6 OS=Arabidopsis thaliana G... [more]
PEL56_SOLLC4.491e-3459.65Probable pectate lyase P56 OS=Solanum lycopersicum... [more]
PEL16_ARATH5.865e-3459.82Probable pectate lyase 16 OS=Arabidopsis thaliana ... [more]
PEL4_ARATH1.000e-3358.93Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
PEL17_ARATH2.229e-3358.93Putative pectate lyase 17 OS=Arabidopsis thaliana ... [more]
SBP_CRYJA1.106e-3253.39Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAJ1_JUNAS2.464e-3255.45Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC12FM1 TF Citrus clementina cDNA clone KN0AAP3YC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925138 ID=FC925138; Name=FC925138; organism=Citrus clementina; type=EST; length=735bp
ATTCTTCTCTCTTTCTCTTTCCTTCTCTGCTGCTTTTTCTTTCTTCCTTT
CTTTTTTTTCTCGGTTGTGTTTGGGAAGTGGGAAAGAGAGAGAAAATCAA
AGAAAACAACGCAATGGCGGTGACGCAGCGTGGCATTTGTCTCTGTTTTG
CTGTCGTTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAACGAG
CAAGACGTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAACTC
AACAATGGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAACATG
CAGTTGATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACCCGC
AACAGCACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGGTAA
TCCCATTGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACCGCA
AGCGTCTTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGTGGC
CGTGATGGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCCTGT
TAACCCCAAACCTGGAACTTTACGCCATGCTGTTATCCAGGATAAGCCTC
TCTGGATTGTTTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAACTG
ATTGTCAATAGCTTCCAGACCCTTGATGGTCGTGGGGCGAATGTGCACAT
TGCTAATGGAGGTTGCATCACTATCCAATTTGTGA
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