FC925221

Overview
NameFC925221
Unique NameFC925221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29
Identity = 75/226 (33.19%), Postives = 133/226 (58.85%), Query Frame = 1
Query:   37 DMPAEMKTEGV------GEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            D P + + E +      G     +L  V+   +P  + A++G SGAGK++L+++LA R       G + ++  P ++  F ++SGY  Q D   P +TV E+LL+SA LRL    D  + +  V  ++  + L+++  + VG   V G+S  +R+R++I VE++ +P ++ +DEPTSGLD+ +A +++  +++  +T GRT++ TIHQP   I + F+ +LLL  G
Sbjct:   39 DQPVKTEEESLKLEDETGNKVKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQ--TGSVYVNKRPVDRANFKKISGYVTQKDTLFPLLTVEETLLFSAKLRLKLPADELRSR--VKSLVHELGLEAVATARVGDDSVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDMLKHMAETRGRTIILTIHQPGFRIVKQFNSVLLLANG 260          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: YO075_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YOL075C OS=Saccharomyces cerevisiae GN=YOL075C/YOL074C PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.350e-29
Identity = 70/217 (32.26%), Postives = 129/217 (59.45%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYI-----EGDIKISGYPKNQETFARVSGYCEQNDIHS-PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            ++L SV+  F+PG++ A+MG SG+GK++L+++++GR            G I  +    ++  F  V  Y  Q+D H    +TV E+L Y+A LRL    + ++ +   D ++  + LK   ++++G   V G+S  +++R+T+ V+L+ +P I+ +DEPTSGLD+  +A ++  +     + G+T++ TIHQP  ++F+ F  +LLL + GR  + G
Sbjct:  708 EILQSVNAIFKPGMINAIMGPSGSGKSSLLNLISGRLKSSVFAKFDTSGSIMFNDIQVSELMFKNVCSYVSQDDDHLLAALTVKETLKYAAALRLHHLTEAERMER-TDNLIRSLGLKHCENNIIGNEFVKGISGGEKRRVTMGVQLLNDPPILLLDEPTSGLDSFTSATILEILEKLCREQGKTIIITIHQPRSELFKRFGNVLLLAKSGRTAFNG 923          

HSP 2 Score: 127.102 bits (318), Expect = 9.690e-29
Identity = 81/227 (35.68%), Postives = 135/227 (59.47%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIKI----SGYPKNQETFAR--------------VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 708
            L+++ S     G + A+MG SG+GKTTL++VLA + +GG    G I+     +G   N+    R              +  Y  Q D+ SP +T  E+L ++A L+L+S   TKK  + V++++E + LK   D++VG     GLS  +++RL+I  ++++NPSI+F+DEPT+GLDA +A +V++T++    + GRT + +IHQP  DI    D++ +L + G V+Y
Sbjct:   44 LVNTFSMDLPSGSVMAVMGGSGSGKTTLLNVLASKISGGLTHNGSIRYVLEDTGSEPNETEPKRAHLDGQDHPIQKHVIMAYLPQQDVLSPRLTCRETLKFAADLKLNSSERTKK--LMVEQLIEELGLKDCADTLVGDNSHRGLSGGEKRRLSIGTQMISNPSIMFLDEPTTGLDAYSAFLVIKTLKKLAKEDGRTFIMSIHQPRSDILFLLDQVCILSK-GNVVY 267          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.350e-29
Identity = 75/219 (34.25%), Postives = 128/219 (58.45%), Query Frame = 1
Query:    1 LSLTFDNMSYFVDMPAEMKTEGVGE--DRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 645
            ++L F+N+ Y V +       G  +  +   +L  ++G  +PG + A++G SG+GKT+L+  L GR  +  G + G+I  +  P ++    R +G+  Q+D   P +TV E+L+++A LRL +    +++      VM  + L    D+++G P + G+S  +RKR++I  E++ NPS++F+DEPTSGLD+  A  ++  +      GRTVV TIHQPS
Sbjct:   35 VTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAV-KRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPS 252          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: PDR1_SCHPO (ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe GN=pdr1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 75/216 (34.72%), Postives = 127/216 (58.80%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 729
            Q+L +VSG  +   LTAL+G + +GK+ L+ +L+ R   G +EG+I +SG  KN +   +  GY  +N +     TV E+L   A LR S      ++  +V+ V++ + L  + D +VG  G  GLS   ++ L+IAVEL A P SI+ +DEP +GLD+++A +++  ++    +G +++C++ QPS  I E FD +L+L   G  +Y   +G +
Sbjct:  775 QILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGSVEGEITLSGL-KNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVIDFLGLGEVADFIVGDMG-KGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARSGLSILCSVSQPSSRILELFDMMLILDLNGNTVYYDTMGRD 988          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG5_MOUSE (ATP-binding cassette sub-family G member 5 OS=Mus musculus GN=Abcg5 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28
Identity = 73/215 (33.95%), Postives = 122/215 (56.74%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRL---SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 717
            Q+L  VS     G +  ++G SG+GKTTL+D ++GR +  G +EG++ ++G    ++ F     Y  Q+D+    +TV E+L Y+A L L   S+D   KK    V+ VM  + L  + D M+G     G+S+ +R+R++IA +L+ +P ++ +DEPT+GLD   A  ++  +       R V+ TIHQP  ++F+ FD++ +L  G  V    P
Sbjct:   68 QILKDVSLYIESGQIMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCFSYVLQSDVFLSSLTVRETLRYTAMLALCRSSADFYNKK----VEAVMTELSLSHVADQMIGSYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANQIVLLLAELARRDRIVIVTIHQPRSELFQHFDKIAILTYGELVFCGTP 278          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG8_MOUSE (ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.819e-28
Identity = 74/209 (35.41%), Postives = 120/209 (57.42%), Query Frame = 1
Query:   91 LHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            + ++S   R G + A++G SG G+ +L+DV+ GR  GG ++ G I I+G P   +   +   +  Q+D   P +TV E+L + A +RL       +R   V++V+  + L+   ++ VG   V G+S  +R+R++I V+L+ NP I+ +DEPTSGLD+  A  ++ T+       R V+ ++HQP  DIF  FD L+LL   G  IY G
Sbjct:   89 IRNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKMKSGQIWINGQPSTPQLVRKCVAHVRQHDQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCANTRVGNTYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVTTLSRLAKGNRLVLISLHQPRSDIFRLFD-LVLLMTSGTPIYLG 296          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG5_RAT (ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.117e-27
Identity = 71/213 (33.33%), Postives = 120/213 (56.34%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 717
            ++L  VS     G    ++G SG+GKTTL+D ++GR +  G +EG++ ++G    ++ F     Y  Q+D+    +TV E+L Y+A L L SS  D   +K  V+ V+  + L  + D M+G     G+S+ +R+R++IA +L+ +P ++ +DEPT+GLD   A  ++  +       R V+ TIHQP  ++F  FD++ +L  G  V    P
Sbjct:   68 KILKDVSLYIESGQTMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQDCVSYLLQSDVFLSSLTVRETLRYTAMLALRSSSADFYDKK--VEAVLTELSLSHVADQMIGNYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARRNRIVIVTIHQPRSELFHHFDKIAILTYGELVFCGTP 278          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABCG5_HUMAN (ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 70/211 (33.18%), Postives = 117/211 (55.45%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            Q+L  VS     G +  ++G SG+GKTTL+D ++GR    G   G++ ++G    +E F     Y  Q+D     +TV E+L Y+A L +        +K  V+ VM  + L  + D ++G   + G+ST +R+R++IA +L+ +P ++  DEPT+GLD   A  ++  +       R VV TIHQP  ++F+ FD++ +L   G +I+ G
Sbjct:   67 QILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFLGEVYVNGRALRREQFQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSFQKK-VEAVMAELSLSHVADRLIGNYSLGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLVELARRNRIVVLTIHQPRSELFQLFDKIAILS-FGELIFCG 275          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 87/251 (34.66%), Postives = 137/251 (54.58%), Query Frame = 1
Query:    4 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGR-------KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 726
            SLT  N+SY ++                +L+SVS A     + A++G SG GK+TL+ +++GR        +   +  + KI+ Y  NQ    R+ G+  Q+D   P +TV E+L+YSA   L  D   K+R+  V+ ++  + L  + DS VG       G+S  +RKR++IAVE++ +P I+ +DEPTSGLD+R +  V+  +     +  RTV+ +IHQPS  I +   + L+L RG  VI+ G L H
Sbjct:   51 SLTVTNLSYTIN-------------HTPILNSVSLAAESSKILAVVGPSGTGKSTLLKIISGRVNHKALDPSSAVLMNNRKITDY--NQ--LRRLCGFVPQDDDLLPLLTVKETLMYSAKFSLR-DSTAKEREERVESLLSDLGLVLVQDSFVGEGDEEDRGVSGGERKRVSIAVEMIRDPPILLLDEPTSGLDSRNSLQVVELLATMAKSKQRTVLFSIHQPSYRILDYISDYLILSRGS-VIHLGSLEH 282          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: AB4G_ARATH (ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.891e-24
Identity = 69/212 (32.55%), Postives = 122/212 (57.55%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 720
            +L +++    P  + A++G SGAGK+TL+D+LA R +     G I ++    N  ++ ++S Y  Q+D   P +TV E+  +SA L L  ++   K    V  +++ + L  L  + +G     GLS  +R+R++I + L+ +P ++ +DEPTSGLD+++A  V++ +++      R V+ +IHQPS  I    D +LLL + G ++Y G L
Sbjct:   30 ILRNITLTSHPSQILAIIGPSGAGKSTLLDILAARTSP--TSGSILLNSVLINPSSYRKISSYVPQHDTFFPLLTVSETFTFSASLLLPKNLS--KVSSVVASLLKELNLTHLAHTRLG----QGLSGGERRRVSIGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQILKSIATSRERIVILSIHQPSFKILSLIDRVLLLSK-GTIVYHGRL 232          
The following BLAST results are available for this feature:
BLAST of FC925221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
AB5G_ARATH1.953e-2933.19ABC transporter G family member 5 OS=Arabidopsis t... [more]
YO075_YEAST4.350e-2932.26Uncharacterized ABC transporter ATP-binding protei... [more]
AB9G_ARATH4.350e-2934.25ABC transporter G family member 9 OS=Arabidopsis t... [more]
PDR1_SCHPO1.653e-2834.72ATP-binding cassette transporter pdr1 OS=Schizosac... [more]
ABCG5_MOUSE1.653e-2833.95ATP-binding cassette sub-family G member 5 OS=Mus ... [more]
ABCG8_MOUSE2.819e-2835.41ATP-binding cassette sub-family G member 8 OS=Mus ... [more]
ABCG5_RAT3.117e-2733.33ATP-binding cassette sub-family G member 5 OS=Ratt... [more]
ABCG5_HUMAN2.918e-2533.18ATP-binding cassette sub-family G member 5 OS=Homo... [more]
AB23G_ARATH2.918e-2534.66ABC transporter G family member 23 OS=Arabidopsis ... [more]
AB4G_ARATH1.891e-2432.55ABC transporter G family member 4 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YF19FM1 TF Citrus clementina cDNA clone KN0AAP8YF19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925221 ID=FC925221; Name=FC925221; organism=Citrus clementina; type=EST; length=733bp
CTTTCACTTACATTCGACAATATGAGCTACTTCGTGGATATGCCTGCAGA
AATGAAGACTGAAGGAGTTGGAGAAGATCGTCTTCAACTGCTACACAGTG
TCAGCGGTGCATTCAGGCCAGGAATATTGACAGCATTAATGGGTGTAAGT
GGTGCGGGGAAGACAACTCTGATGGATGTATTGGCAGGAAGGAAGACCGG
AGGATATATTGAAGGGGACATTAAAATTTCTGGTTACCCCAAAAACCAAG
AAACATTTGCTCGAGTGAGTGGTTATTGTGAACAGAATGACATTCATTCA
CCCTATGTTACTGTCTATGAATCTCTCCTCTACTCAGCATGGCTTCGTCT
TTCTTCAGACGTTGATACGAAAAAAAGAAAGATGTTTGTTGATGAAGTTA
TGGAGCTTGTTGAGCTCAAATCATTGAATGATTCTATGGTTGGCCTTCCC
GGAGTAAGTGGTCTTTCGACAGAGCAAAGGAAGAGATTGACGATTGCTGT
AGAATTGGTTGCTAACCCTTCTATCATCTTCATGGATGAGCCTACATCTG
GGCTTGATGCTAGAGCTGCTGCTATTGTCATGCGTACTGTTAGAAATACA
GTGGATACAGGGAGAACAGTTGTGTGTACAATCCACCAGCCAAGCATAGA
CATTTTTGAAGCATTTGACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCG
TCATTTATGCTGGACCTCTTGGTCACGAATCTC
back to top