FC925221

Overview
NameFC925221
Unique NameFC925221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: CYSA_BACHD (Sulfate/thiosulfate import ATP-binding protein cysA OS=Bacillus halodurans GN=cysA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 53/204 (25.98%), Postives = 98/204 (48.04%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            Q L  ++ +   G L AL+G SG+GKT+L+ ++AG +     +GDI        Q   A R  G+  Q+    P++TV +++ Y   LR+    +   +K   ++V EL+ L  L       P  + LS  QR+R+ +A  L   P ++ +DEP   LDA+    + + +R   +  +     +     +  +  D ++++ +G
Sbjct:   16 QALADINLSIETGELVALLGPSGSGKTSLLRIIAGLEAAD--QGDIYFHKDKVTQTHAASRQVGFVFQHYALFPHMTVADNISYG--LRVKPRKERPSKKEIAEKVRELLALVKLEGMDDRYP--AQLSGGQRQRIALARALAVEPKVLLLDEPFGALDAKVRKDLRKWLRKLHNEFQVTSVFVTHDQEEALDVSDRVVVMNQG 213          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: ABC8A_MOUSE (ATP-binding cassette sub-family A member 8-A OS=Mus musculus GN=Abca8a PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 43/150 (28.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:  121 GILTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR--LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 558
            G +TA++G SGAGK+TL++VL+G    T G++           + E  ++++G C Q ++   ++TV E+L   A ++   + +VD + +++ ++     +++K+  + +V       LS  Q+++LT  + ++ +P I  +DEPT+GLD
Sbjct:  507 GQITAILGHSGAGKSTLLNVLSGLCVPTKGWVTIHNNKLSEMTDLENISKLTGVCPQCNVQFDFLTVRENLRLFAKIKGIQAHEVDNEVQRVLLE-----LDMKNTQNILV-----QNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLD 646          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: PHNC_SHISS (Phosphonates import ATP-binding protein phnC OS=Shigella sonnei (strain Ss046) GN=phnC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 70/225 (31.11%), Postives = 108/225 (48.00%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IKISGYPKNQE-TFAR-------VSGYCEQNDIHSPYVTVYESLLYSA-----WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            Q LH+V+     G + AL+G SG+GK+TL+  L+G  TG    G  I++ G    +E   AR        +GY  Q       ++V E++L  A     + R      T+++K    + +  V +            VS LS  Q++R+ IA  L+    +I  DEP + LD  +A IVM T+R+   + G TVV T+HQ  +D    + E ++  R G V Y G
Sbjct:   18 QALHAVALNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: PHNC_SHIBS (Phosphonates import ATP-binding protein phnC OS=Shigella boydii serotype 4 (strain Sb227) GN=phnC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 67/227 (29.52%), Postives = 108/227 (47.58%), Query Frame = 1
Query:   85 QLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGD-IKISGYPKNQETFARVSGYCEQNDIHSPYV----------TVYESLLYSA-----WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            Q LH+V        + AL+G SG+GK+TL+  L+G  TG    G  I++ G    +E   R++    ++  H+ Y+          +V E++L  A     + R      T+++K    + +  V +       V     S LS  Q++R+ IA  L+    +I  DEP + LD  +A IVM T+R+   + G TVV T+HQ  +D    + E ++  R G V Y G
Sbjct:   18 QALHAVDLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRLARDIRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: PHNC_CORGL (Phosphonates import ATP-binding protein phnC OS=Corynebacterium glutamicum GN=phnC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 65/220 (29.55%), Postives = 105/220 (47.73%), Query Frame = 1
Query:   91 LHSVSGAFRPGILTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVS-GYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 720
            L  VS    PG + A++G+SG+GK+TL+  + G  R T G +  G  +I+         AR   G   Q    S   +V++++L     ++AW R      T+  K      +E V +     +  G      LS  Q++R+ IA  L  +PS++  DEP + LD   A  VMR + N  +  G TV+  +H   ID+   +   L+  R G+++Y GP+
Sbjct:   30 LDDVSLTINPGEMVAIVGLSGSGKSTLIRTINGLVRATEGTVTVGPHQINTLKGKALRDARGQIGMIFQGFNLSERSSVFQNVLVGRFAHTAWWRNLLGFPTEHDKQIAFHALESVGILDKVWTRAG-----ALSGGQKQRVAIARALSQDPSVMLADEPVASLDPPTAHSVMRDLENINNVEGLTVLVNLH--LIDLARQYTTRLVGLRAGKLVYDGPI 242          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: NODI_BRAJA (Nod factor export ATP-binding protein I OS=Bradyrhizobium japonicum GN=nodI PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 61/213 (28.64%), Postives = 105/213 (49.30%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KNQETFARVS-GYCEQNDIHSPYVTVYESLL-YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 717
            +++ +S +   G    L+G +GAGK+T+  +L G  +     G I +   P  ++   ARV  G   Q D   P  TV E+LL +  +  +S+    +  +  V  ++E   L+S  D  V L     LS   ++RLT+A  L+ +P ++ MDEPT+GLD  A  ++   +R  +  G+T++ T H    +     D L +L+ G ++    P
Sbjct:   22 IVNDLSFSVARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLDEPVPSRARAARVRVGVVPQFDNLEPEFTVRENLLVFGRYFGMSA----RTIEAVVPSLLEFARLESKADVRVSL-----LSGGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKTILLTTHFME-EAERLCDRLCVLESGCKIAEGKP 222          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: MODC_MYCTU (Molybdenum import ATP-binding protein modC OS=Mycobacterium tuberculosis GN=modC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 66/224 (29.46%), Postives = 107/224 (47.77%), Query Frame = 1
Query:   67 VGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPK--NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 720
            V + RL +  SVS     G + A++G +GAGK+T + V+AG  R   G +  GD  ++      N  T  R  G   Q+ +  P+++V +++ +    R       + R         L  L+ +N           LS  Q +R+ IA  L A P ++ +DEP +GLD  AAA +   +R+ V  +G  VV T H   +D+F   D +L+L+  G +   GP+
Sbjct:   10 VADRRLDVEFSVSA----GEVLAVLGPNGAGKSTALHVIAGLLRPDAGLVRLGDRVLTDTEAGVNVATHDRRVGLLLQDPLLFPHLSVAKNVAFGPQCRRGMFGSGRART----RASALRWLREVNAEQFADRKPRQLSGGQAQRVAIARALAAEPDVLLLDEPLTGLDVAAAAGIRSVLRSVVARSGCAVVLTTHD-LLDVFTLADRVLVLE-SGTIAEIGPV 223          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: MAM1_SCHPO (Mating factor M secretion protein mam1 OS=Schizosaccharomyces pombe GN=mam1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 64/204 (31.37%), Postives = 110/204 (53.92%), Query Frame = 1
Query:   91 LHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KNQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 693
            L++VS +       A++G+SG+GK+TL+++L  RKT  Y   DI I GYP  N +T    +     +Q   H    T+ ESLLY     ++S +D    K ++ EV++   L +  D+ + L      S  Q +RL  A  L+ NP ++ +DE TS LD++++ ++ +T++N      TV+   HQPS  + +  D ++++  G
Sbjct: 1118 LNNVSLSIEAREKVAIVGISGSGKSTLVELL--RKT--YPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKP-HLLGSTILESLLYGVDRDINSVMDALD-KTYMTEVIQ--NLPNGLDTPL-LEFSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQN---LSCTVLIITHQPS--LMKLADRIIVMDSG 1307          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: MACB_AGGAC (Macrolide export ATP-binding/permease protein macB OS=Aggregatibacter actinomycetemcomitans GN=macB PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 57/197 (28.93%), Postives = 92/197 (46.70%), Query Frame = 1
Query:   64 GVGEDRLQLLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 648
            G GE+R+ +L  +S +   G   A+MG SG+GK+TLM+++    T     G  KI G    + T  ++S    Q    I   Y  +  SL  +  + L +      +   ++   +L+E   L D     P  + LS  Q++R++IA  L+    II  DEPT  LD+ +   VM  +R   + G T++   H   I
Sbjct:   14 GEGENRVHVLKDISLSIERGDFVAIMGQSGSGKSTLMNIIGCLDTA--TGGSSKIDGKETIELTNDQLSDLRSQKFGFIFQRY-NLLSSLTAAENVALPAIYAGMPQSQRLERAKQLLEKLGLGDKWQNKP--NQLSGGQQQRVSIARALMNGGEIILADEPTGALDSHSGENVMEILRQLHEEGHTIIMVTHDKHI 205          
BLAST of FC925221 vs. ExPASy Swiss-Prot
Match: FHUC_ECOLI (Iron(3+)-hydroxamate import ATP-binding protein fhuC OS=Escherichia coli (strain K12) GN=fhuC PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 65/218 (29.82%), Postives = 104/218 (47.71%), Query Frame = 1
Query:   88 LLHSVSGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK---NQETFARVSGYCEQNDIHSPYVTVYESLLYSAW-----LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 714
            LLH +S  F  G +T L+G +G+GK+TL+ +L   +     EG+I +   P    + + FAR   Y  Q    +  +TV E +    +     L      D +K    V+E + LV LK L   +     V  LS  +R+R  IA+ +  +   + +DEPTS LD      V+  V R + + G TV+  +H   I++   + + L+  RGG +I  G
Sbjct:   26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREK----VEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQG 230          
The following BLAST results are available for this feature:
BLAST of FC925221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 300
Match NameE-valueIdentityDescription
CYSA_BACHD2.398e-1125.98Sulfate/thiosulfate import ATP-binding protein cys... [more]
ABC8A_MOUSE2.398e-1128.67ATP-binding cassette sub-family A member 8-A OS=Mu... [more]
PHNC_SHISS3.132e-1131.11Phosphonates import ATP-binding protein phnC OS=Sh... [more]
PHNC_SHIBS3.132e-1129.52Phosphonates import ATP-binding protein phnC OS=Sh... [more]
PHNC_CORGL3.132e-1129.55Phosphonates import ATP-binding protein phnC OS=Co... [more]
NODI_BRAJA3.132e-1128.64Nod factor export ATP-binding protein I OS=Bradyrh... [more]
MODC_MYCTU3.132e-1129.46Molybdenum import ATP-binding protein modC OS=Myco... [more]
MAM1_SCHPO3.132e-1131.37Mating factor M secretion protein mam1 OS=Schizosa... [more]
MACB_AGGAC3.132e-1128.93Macrolide export ATP-binding/permease protein macB... [more]
FHUC_ECOLI3.132e-1129.82Iron(3+)-hydroxamate import ATP-binding protein fh... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF19FM1 TF Citrus clementina cDNA clone KN0AAP8YF19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925221 ID=FC925221; Name=FC925221; organism=Citrus clementina; type=EST; length=733bp
CTTTCACTTACATTCGACAATATGAGCTACTTCGTGGATATGCCTGCAGA
AATGAAGACTGAAGGAGTTGGAGAAGATCGTCTTCAACTGCTACACAGTG
TCAGCGGTGCATTCAGGCCAGGAATATTGACAGCATTAATGGGTGTAAGT
GGTGCGGGGAAGACAACTCTGATGGATGTATTGGCAGGAAGGAAGACCGG
AGGATATATTGAAGGGGACATTAAAATTTCTGGTTACCCCAAAAACCAAG
AAACATTTGCTCGAGTGAGTGGTTATTGTGAACAGAATGACATTCATTCA
CCCTATGTTACTGTCTATGAATCTCTCCTCTACTCAGCATGGCTTCGTCT
TTCTTCAGACGTTGATACGAAAAAAAGAAAGATGTTTGTTGATGAAGTTA
TGGAGCTTGTTGAGCTCAAATCATTGAATGATTCTATGGTTGGCCTTCCC
GGAGTAAGTGGTCTTTCGACAGAGCAAAGGAAGAGATTGACGATTGCTGT
AGAATTGGTTGCTAACCCTTCTATCATCTTCATGGATGAGCCTACATCTG
GGCTTGATGCTAGAGCTGCTGCTATTGTCATGCGTACTGTTAGAAATACA
GTGGATACAGGGAGAACAGTTGTGTGTACAATCCACCAGCCAAGCATAGA
CATTTTTGAAGCATTTGACGAGCTATTGTTGTTGAAAAGAGGGGGCCGCG
TCATTTATGCTGGACCTCTTGGTCACGAATCTC
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